RNA id: TU1227383


Basic Information

Item Value
RNA id TU1227383
length 2866
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G1078240
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46078119 ~ 46081042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTTAATGAAAGTAataaactgtaacaatgtatgaATTGGACCATTGATAGATCACACTGAAACACATTGCAGATTTTAAAGTGTGATGCACTTCTGAAACATTCCTTAAAAAATACCAGTGCTGATTTTTTTATGTTAATCATTTCATTTTTCTAAAGTTCTGGCCCCTCTATAATATTGAATCATTTCACAACCtaaatatatttgcaaacattatATACACAAATACAAACAATAGACAACATCATTATGTAAGATTGCTGTCTTTTACTATGTACACCTTCACACAATTATTGTCACACCTGAACCCCTGATGAATAACAAAGAAAATATCCAAATGAACCTCACTGTACCCAATAcgataacactttacttgacacccagggTCATAACACATGATGACATGATCATAACCATGCCATGATATGTCATAACAgatgacataacttgtcataatagGATCacaacactgtcatgacacaaatttagacctgttgtgaaaTATATtacgttattttatggctggttatgacacctacataagagtgtcaaaccCGACAAAACTACCACACcaggcaaaacattccattacaccacaGCCTACTTGTTTGTGCTatataacattttctgaaatgTACCATATTAAATTAGCATTGTAACTGTGCACACATTGATGTCAAacatgcacctaccccaatgctctgtttcTAATGACTAGGATGAACACAGAAACAGATTTCAGGAGCACGGGAAGACTATTTTTGACTGATTACAGATGTAAGGGCATGTATGTGATAGGCCTATCTtgcttatatgattatgatggtcatactGCTTCTTGGTAGTGTcataaagtgtattttcttagtccatgTGACACAGGGTGGTTATAATGGTTTATGACCGTGTCAAAAAGTATATTTTCTACAAGTTAGTAGAAAATTATTTAAAATAGTTATTTAAaataagatgggggggggggggacatgactGTAAAGAATTCATAACAAAAATAAAGGACAAAGGACAAACTTTCAAAtgaaaggaaacttcttggcagggaCAAAGCATTTGaataggtgtcataaccagccataaaataacgcaatatatgccacaacaggtgtaaatatatgggtcatgacagtgttaagACCATGTTATGTCAGGTGTTATGACATATTACGATATGGTTATGACCATGTCATAACTTgttatgacgctgggtgtcaaTTAAAGTGTTACTAAACAAAACAATGTACATGGACAGCTCAACTGAATCCAACATATACAACTGTATAGGCTACATGCATTTTCCGGtggtcaaatacatttaaataaaatgtaacctttatttaataaaggccatttaaaaatgtttgcctacccaggtttttttttttacacctttttcaaatagaaaaacaaaaaaaatattttctgtgtTCACAACAATGCCTAAACCACATCAGGGGACGACTTTTGAGGTCTAGGAAAAATCTAAgaaatttagtttttttttgtgtgtagttgccCTTTATTTCAGTGAGCATGCCCTGCACTGTTGTTTGGTGAGTAGATTTTATGTAGTGCAGTAagcacatacactaccgttcaaaagtgtggggtcatttagaaatgtccttgtttttgaaagaaatctACCATTTTtggttcattaaaataacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaatggtaGATGAAAAAAAATGGAATGTCTCATAGCCGTAAAGAggcccatcagcaaccatcactcctgtgttctaatggcacgttgtgttagctaatccaagtttataattttaaaaggctaatagatcattagaaaacccttttgcaattatgttagcacacctgaaaactgttgttctgattaaagaagtaataaaactggccttctgtagactagttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatggccagaaacatagatctttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcgtacaacgctgtgtactactcccttcacagaacaaaaatgtgattttaaacctaaccctaacttatGAAGGCCAATGTGTTGGTCCACCAGACCTTCTGCGCATTTGGGCAGAAGTGTTTGAGGTTAGGAGTAATGTGAATAACATGACATCACTTTAGAGCCTTATGCCATGCTTCAGCACAACATGTCACCCTTTTATAAAGCACATgtttatatcacatttgacatagTGGGTTATGGCAGTTGACATTGGTGATTATGTCACATAGTTAggccacatttatgaaccctttataaaccATAAAATACAGTTAAAGATACTGTGCAACAcatttatgtagtgcttatgaaggcATCATGAAGCTTCTATAATTTGAACATAATTTAAAGCGGGACCAAGTATTGTATATGACATTTGACAATATGTGTGTTTGATGGATTGTATCCATTTCTGATTCCCTTCATTGACATCGGTAGTTTTAGTTCTCTTCCACAACAGGCAGGATTTCTCAGTGGTGATAGGGCATAGGGTTCCATGTGCGATACCACGACCTGAAACGTAAACATAACAGATTCATCGCTCATCTGTACAATGCCATGTTGCCATTACAGCACTAGAATAATCTTCTGGGTGTCTCtaaaatgacaccatattccctatgtattgcattacctttgaccaggccatagggctctagtcaaatgtagtgtactatatactgtGGGTAATGGGGTGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227347 lncRNA downstream 57640 46017683 ~ 46020479 (-) False LOC110537691
TU1227348 lncRNA downstream 57640 46018030 ~ 46020479 (-) True LOC110537691
TU1227298 lncRNA downstream 70036 45964019 ~ 46008083 (-) True G1078160
TU1227294 lncRNA downstream 133127 45915318 ~ 45944992 (-) True G1078159
TU1227305 lncRNA downstream 140355 45936773 ~ 45937764 (-) True G1078167
TU1227457 lncRNA upstream 111876 46192918 ~ 46290067 (-) True G1078306
TU1227500 lncRNA upstream 145349 46226391 ~ 46284095 (-) False G1078342
TU1227437 lncRNA upstream 153708 46234750 ~ 46236938 (-) True G1078292
TU1227499 lncRNA upstream 173288 46254330 ~ 46284095 (-) True G1078342
TU1227536 lncRNA upstream 211363 46292405 ~ 46292660 (-) True G1078373
XM_021623924.2 mRNA downstream 54443 46017383 ~ 46023676 (-) False LOC110537691
XM_021623918.2 mRNA downstream 199613 45868111 ~ 45878506 (-) True LOC110537687
XM_021623919.2 mRNA downstream 206020 45868111 ~ 45872099 (-) False LOC110537687
XR_005034989.1 mRNA downstream 258013 45816854 ~ 45820106 (-) True LOC118937677
XM_036939508.1 mRNA downstream 262999 45732752 ~ 45815120 (-) False LOC110538902
XM_021623930.2 mRNA upstream 160488 46241530 ~ 46243966 (-) False foxr1
XM_036937656.1 mRNA upstream 160488 46241530 ~ 46243971 (-) False foxr1
XM_021623931.2 mRNA upstream 160488 46241530 ~ 46243978 (-) False foxr1
XM_036937657.1 mRNA upstream 160488 46241530 ~ 46243978 (-) True foxr1
XM_021623934.2 mRNA upstream 241305 46322347 ~ 46343466 (-) True LOC110537697
TU1225874 other downstream 924782 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 1477231 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 1477231 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 1622849 44454648 ~ 44455270 (-) True G1076460
TU1224387 other downstream 2303694 43774064 ~ 43774425 (-) True G1075509
TU1227478 other upstream 121562 46202604 ~ 46206088 (-) True G1078323
TU1227962 other upstream 735401 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 1833509 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 2337379 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 2820366 48901408 ~ 48905274 (-) True G1081571

Expression Profile