Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040913 |
| length | 741 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | XLOC_020743 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 3160447 ~ 3182965 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051131 | chaperone-mediated protein complex assembly | biological_process |
| GO:0030163 | protein catabolic process | biological_process |
| GO:0007005 | mitochondrion organization | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0034599 | cellular response to oxidative stress | biological_process |
| GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | biological_process |
| GO:0070407 | oxidation-dependent protein catabolic process | biological_process |
| GO:0005759 | mitochondrial matrix | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0004176 | ATP-dependent peptidase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008236 | serine-type peptidase activity | molecular_function |
| GO:0003697 | single-stranded DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-4006 | Predicted to enable ATP-dependent peptidase activity and single-stranded DNA binding activity. Predicted to be involved in chaperone-mediated protein complex assembly; mitochondrion organization; and protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in CODAS syndrome. Orthologous to human LONP1 (lon peptidase 1, mitochondrial). |
| ensembl_id | ENSDART00000167550 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00040911 | lncRNA | downstream | 12496 | 3147100 ~ 3152146 (-) | True | XLOC_020742 |
| TCONS_00042296 | lncRNA | downstream | 272096 | 2889663 ~ 2892546 (-) | True | XLOC_020738 |
| TCONS_00042295 | lncRNA | downstream | 336556 | 2814463 ~ 2828086 (-) | True | XLOC_020736 |
| TCONS_00042293 | lncRNA | downstream | 338941 | 2795028 ~ 2825701 (-) | True | XLOC_020734 |
| TCONS_00042297 | lncRNA | upstream | 174690 | 3347513 ~ 3347884 (-) | True | XLOC_020747 |
| TCONS_00042298 | lncRNA | upstream | 567763 | 3740586 ~ 3741284 (-) | True | XLOC_020749 |
| TCONS_00042299 | lncRNA | upstream | 710784 | 3883607 ~ 3886684 (-) | True | XLOC_020750 |
| TCONS_00042300 | lncRNA | upstream | 1560184 | 4733007 ~ 4735337 (-) | True | XLOC_020756 |
| TCONS_00042301 | lncRNA | upstream | 1572284 | 4745107 ~ 4746442 (-) | True | XLOC_020758 |
| TCONS_00040910 | mRNA | downstream | 12285 | 3121086 ~ 3152357 (-) | False | XLOC_020742 |
| TCONS_00040908 | mRNA | downstream | 72506 | 2949111 ~ 3092136 (-) | False | XLOC_020741 |
| TCONS_00040909 | mRNA | downstream | 205637 | 2949140 ~ 2959005 (-) | True | XLOC_020741 |
| TCONS_00040907 | mRNA | downstream | 227113 | 2931340 ~ 2937529 (-) | True | XLOC_020740 |
| TCONS_00040906 | mRNA | downstream | 227139 | 2931340 ~ 2937503 (-) | False | XLOC_020740 |
| TCONS_00040914 | mRNA | upstream | 80113 | 3252936 ~ 3261879 (-) | False | XLOC_020744 |
| TCONS_00040915 | mRNA | upstream | 81437 | 3254260 ~ 3255341 (-) | True | XLOC_020744 |
| TCONS_00040916 | mRNA | upstream | 89590 | 3262413 ~ 3299355 (-) | False | XLOC_020745 |
| TCONS_00040917 | mRNA | upstream | 90605 | 3263428 ~ 3284023 (-) | False | XLOC_020745 |
| TCONS_00040918 | mRNA | upstream | 90605 | 3263428 ~ 3299100 (-) | False | XLOC_020745 |
| TCONS_00040899 | other | downstream | 1934620 | 1229906 ~ 1230022 (-) | True | XLOC_020689 |
| TCONS_00040895 | other | downstream | 2004893 | 1158069 ~ 1159749 (-) | False | XLOC_020686 |
| TCONS_00040885 | other | downstream | 2347235 | 812920 ~ 817407 (-) | True | XLOC_020678 |
| TCONS_00040857 | other | downstream | 2817228 | 344918 ~ 347414 (-) | False | XLOC_020658 |
| TCONS_00040924 | other | upstream | 422445 | 3595268 ~ 3680725 (-) | True | XLOC_020748 |
| TCONS_00040930 | other | upstream | 1138980 | 4311803 ~ 4313118 (-) | True | XLOC_020752 |
| TCONS_00040947 | other | upstream | 1646587 | 4819410 ~ 4899294 (-) | False | XLOC_020764 |
| TCONS_00040949 | other | upstream | 1655133 | 4827956 ~ 4899294 (-) | False | XLOC_020764 |
| TCONS_00040955 | other | upstream | 1725763 | 4898586 ~ 4899116 (-) | True | XLOC_020764 |
