RNA id: TCONS_00040914


Basic Information

Item Value
RNA id TCONS_00040914
length 3126
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_020744
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3252936 ~ 3261879 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttgacttaaagaaacagtggcagggaaatgaacacGCCGTGCAGAGGAGGGTTAAATATACACACAATGTAACAATACACTAAATTTATGTCGATCAATATGAACTATTTAGCTGATCAATTCCTCAacaccgcatatctttggacttatgggggaaaccggagcacccagaggagacccacaccaacacgtgcagaacatgcaaactccacacagaaatgccaactggcccagccaggactcgaaccttgctgtgaggcgacagtgttaaccactgagccaccaaagTGTGTTTATATGTTGGGTGAATTTATCACTTTAATAGTAGCTGAAGTGGCTGACTGGACCCCACACGATGAAAACAGCTGCATGATATCAACATGTGTGACCACTCTGGAAAACACACTCATTTctcccagcacacacacacacacactgataaaaGCATTGTTCACGCAAATAATTCAGCTCACTCCTATCCTGAGAGAATTCCCGAGCGGAGCTGGCAGTCATCTGTTAACTAGAGCTGCTGAAGGTGTCAGATTTCTCCATACCAGGGCTGGGGAACATCCTGCATGTCTGCGCATGACGGCGCTTTATACTCTGCTAATAAAAGACTATTTGTCTTTGTACAGAAGACGTTATTGTGCATGAAAGTATACGGAGAGATTTCCTTCAGATTTGACCAGACCCGATGTCTTCCACTCGTGCATTTGAACAGGGCTTTGCGATGTCCAACTGCACGCTCAACCTCAACGACTCCATCCTGACCCTACAAAAAGTCACTTCCATTCCCATGTTCGTTCTAGGGATGCTGGGAAACATCTACGTGTTGGTGAAGTTCTGCTGGCGTCCCAAAACCCAATGGACCTACATGAACATCTACATCTCCAACATGGTTGCCGCCGACTGCGCCCTATTGATCTTCCTGCCTGTTAAGATCCATTACTACAACCGGGAGCTGGCGGGCGGTTTACAGAAGCTCTGCAATTTCGTTTTGTCGCTTTATTACATCAACATGTACGTCAGCATATTCACAATCACCGCCATAAGCGTTGTACGATACGTTGCTATTAAGTATCCAATGAAAGCCAGGGAAATATTCTCTTGTCGAAGCGCTCTGGTGGTTTGCGCCGTAATATGGGTTACCATTTGCTCCATCAGTCCGGTGTACTTCGTCACCGACTCAAGTAACGATAAGACCATGTGCTTCCAGAGGGTCAAGCAAACGTTGTCgctacatttcattttattgctaATTATCGTTGGATTCGTACTGCCATTTATAATCATGCTTTACTGCTCCGCAAGAGTCATTCACACTCTACGAAAACAACTGGACGTCGGATCACGTTCGGAAAAACTCCAATGCATGTTTATCATCATAGCTAATTTAATCGTGTTCATCGTATGCTTCTTTCCGGTTCATTTGGGTTACATCGTTAAATACATTGTACAAAAGGAGTATGCGGATCCGCTGGATAACTACAGCTGCGATTCGAAACTAATCGCGCACAATTTTCTGCACAGCGCCTTTTGCTTGTCGGATATGAACTGTGGTTTGGACTGCTTTAGCTACTTTTTTGCCACCAAAACATCATGGAACATGTGCTGCACAGGTCAAGCCAAAAACGAGAAGAGTAGATATAACACGGTTTCAGATTCTGATGGCAAGTCTTAACCctttgtgtactgttcaaattgactacactttcgttatgttgggggctgtttttgccccattgacctccactaacaatcaagaatgcatgatgaGTAAATGCTGCCATggctttacaataaaaaaaaaatgacgttataatggaagtcaatgagacaAAAACATGATGAAAGGGTAGTCGATTTTGTGTATTcttcaatatttttttccaaattatgcattaaaataagttttgttcaacacaatctcatggcaattcgtaactttttcatttagtggctaatttgtacgaattcgtacaatctaattcgtacattttagtacgatttgctcatcccccaatgacggttgggtttaggggtggggttaggtgccacgcctcctttttaaaattatacaatttcgtacgactgaacttgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctggttttgttACCAAAAATCACTCCATTTGCTGATACACAGAGAAAGTTGAGGCcagactaaagcctggtttatacttctgcgtcaagtgaccggagtgaggtgtaaatgttcctctgtgtcgagtttcttcgcttctgttttgcttttcctgaacacttcctggatgtacaagtgactcaaactcgctcatttcgaggcaggaaccggcggacgtgcaacaactttaactatgaggtaaacacaaaacaaaactttccatccggagctccttcacgggactccacacttgtaaacaatccctcgcgccattcgcgtggctctcggtcccgcccagactagtcagcgctaccaagctgaccaatcacatagcttgcgctatgcgttgttgcgacgtgtagttacattttttgagaggtacacgtcagcgacgccgacggccatggTGAAGtgctatgcgtcagcgctgtagcatacgccggcgtttgacgtagaagtataaatcagccttaagactcAAAGTCACCCCAGACTGGATGAAAACAACCCAACAGCACATAAGAGTTTATTGTTCTTGCTaactttaaaatgttcttttgtgAAAACTGTGCTCATAATAAACAGTTGCTATAATAAATGTTAAGTTTCTGCTCTTGACTGTTGAACTTTAGATATGTTGAGTTATGGTTTCCTTGaaggtttgtttaatattttgggATCCTGGTGGCTAGCCAACCTGTTGAGAGCTAGACATCATTTCCCAAAACACAGCTACGACCCTAAAGTGCATTTTCCATGGGAaagaggtgaaatttaaaaataactgtgtttgaATACAGCAAATGTACTTTATGTAACTCGAAAAGATAAAAGCACATCAATATTTAAACAACCCAGAGTTTATCAGACAGCGGTAGCTACTTCACAGTGACGATTATGATCAGATTTGGTTGTAAAGATTTGG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-17 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR35 (G protein-coupled receptor 35).

Ensembl:

ensembl_id ENSDART00000159643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040911 lncRNA downstream 100790 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 360390 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042295 lncRNA downstream 424850 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042293 lncRNA downstream 427235 2795028 ~ 2825701 (-) True XLOC_020734
TCONS_00042297 lncRNA upstream 85634 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00042298 lncRNA upstream 478707 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042299 lncRNA upstream 621728 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042300 lncRNA upstream 1471128 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 1483228 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00040912 mRNA downstream 69971 3160447 ~ 3182965 (-) False XLOC_020743
TCONS_00040913 mRNA downstream 80113 3164642 ~ 3172823 (-) True XLOC_020743
TCONS_00040910 mRNA downstream 100579 3121086 ~ 3152357 (-) False XLOC_020742
TCONS_00040908 mRNA downstream 160800 2949111 ~ 3092136 (-) False XLOC_020741
TCONS_00040909 mRNA downstream 293931 2949140 ~ 2959005 (-) True XLOC_020741
TCONS_00040916 mRNA upstream 534 3262413 ~ 3299355 (-) False XLOC_020745
TCONS_00040917 mRNA upstream 1549 3263428 ~ 3284023 (-) False XLOC_020745
TCONS_00040918 mRNA upstream 1549 3263428 ~ 3299100 (-) False XLOC_020745
TCONS_00040919 mRNA upstream 11465 3273344 ~ 3275888 (-) True XLOC_020745
TCONS_00040920 mRNA upstream 74844 3336723 ~ 3344613 (-) True XLOC_020746
TCONS_00040899 other downstream 2022914 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 2093187 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 2435529 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 2905522 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 333389 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 1049924 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 1557531 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 1566077 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 1636707 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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