RNA id: TU1227828


Basic Information

Item Value
RNA id TU1227828
length 995
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1078661
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46695767 ~ 46730583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaagctcattaccataacgcaatgttaactattcatgaaaatcgcaaatgaaatgaaataaatatgctagctctcaagcttagccttttgttaacaacactgtcatctcagattttcaaaatatgcttctcaaccataggaaaacaagcatttgtgtaacagtatttatagctagcgtagcatttagcattagcattcagcaggcaacattttcacaaaagccagaaaatcattcaaataaaatcatttacctttgaagaacttcagatgttttcaatgaggagactctgttagatagcaaatgttcagtttttcctgaaagattatttgtttaggagaaatcgctccgtttggtgcgtcacgtttggctaccaaaaaaaaacgaaaattcagtcatcaaaacgccgaacttttttccaaattaactccataatatcgactgaaacatggcaaacgttgtttagaatcaatcctcaaggtgtttttcacatatctcttcattgatacatcgttcttggaaaaatgctttctctcctgaatcccaggagaaaatgcccgcacctgaagattacgcacaaatttagacaaaggacaccgggcggacctctggaaaatgtagtctcttatggccaatcttccaatgatatgcctacaaatacgtcataatgctgctaagaccttgggcgaacgacagaaagtgtaggctcattcgttgcgcaatcacagccatataaggagagaatggaaaacagagcttcagaaattctgctaattcctgggtgatgcatcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattctgaaacttcagagtgttttctttccaaaactgtcaagaatatgcatagtcgagcatcttttcgtgacaaaatatcgcgcttaaaacgggaacgttttttatccaaaaatgaaatagcgcccctagagctctaagaggtttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227795 lncRNA downstream 46478 46649076 ~ 46649289 (-) True G1078630
TU1227781 lncRNA downstream 61675 46633861 ~ 46634092 (-) True G1078616
TU1227776 lncRNA downstream 67527 46627921 ~ 46628240 (-) True G1078611
TU1227728 lncRNA downstream 139859 46555495 ~ 46555908 (-) True G1078563
TU1227716 lncRNA downstream 165889 46529660 ~ 46529878 (-) True G1078551
TU1227899 lncRNA upstream 40646 46771229 ~ 46771500 (-) True G1078721
TU1227906 lncRNA upstream 48766 46779349 ~ 46779596 (-) True G1078728
TU1227914 lncRNA upstream 55705 46786288 ~ 46786517 (-) True G1078736
TU1227920 lncRNA upstream 58406 46788989 ~ 46789214 (-) True G1078742
TU1227937 lncRNA upstream 66834 46797417 ~ 46798153 (-) True G1078758
XM_036937660.1 mRNA downstream 6186 46600848 ~ 46689581 (-) False LOC110537698
XM_036937661.1 mRNA downstream 6186 46601173 ~ 46689581 (-) True LOC110537698
XM_021623935.2 mRNA downstream 6187 46382502 ~ 46689580 (-) False LOC110537698
XM_036937658.1 mRNA downstream 60196 46382502 ~ 46635571 (-) False LOC110537698
XM_021623936.2 mRNA downstream 179927 46382502 ~ 46515840 (-) False LOC110537698
XM_021623937.2 mRNA upstream 180874 46911457 ~ 47030437 (-) False LOC110537699
XM_021623939.2 mRNA upstream 180874 46911457 ~ 47297035 (-) True LOC110537699
XM_036937662.1 mRNA upstream 896073 47626656 ~ 47658364 (-) False LOC110537700
XM_021623940.2 mRNA upstream 896073 47626656 ~ 47658365 (-) True LOC110537700
XM_021623949.2 mRNA upstream 932461 47663044 ~ 47699551 (-) False LOC110537701
TU1227478 other downstream 489679 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 1542430 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 2094879 44546519 ~ 44600888 (-) False LOC110537661
TU1225479 other downstream 2094879 44580758 ~ 44600888 (-) True LOC110537661
TU1225419 other downstream 2240497 44454648 ~ 44455270 (-) True G1076460
TU1227962 other upstream 85860 46816443 ~ 46817065 (-) True G1078783
TU1229609 other upstream 1183968 47914551 ~ 47922446 (-) True LOC110537706
TU1230355 other upstream 1687838 48418421 ~ 48418884 (-) True G1081055
TU1230892 other upstream 2170825 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 2257429 48988012 ~ 48988353 (-) True G1081813

Expression Profile