RNA id: TCONS_00042297


Basic Information

Item Value
RNA id TCONS_00042297
length 320
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_020747
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3347513 ~ 3347884 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGAACCAGCTCATGATCAACAAGCAAGAGCCAGGTTAAACCAGCACATGGCCAGTAAAAATCAGCTTAAACTAGCTCAAGACCagtaagaaccagcttaaaccagctcatgactaACAAAAAACTTAAGTCAGCTCATAACTTGTGGGAACCACCTTAAATAATTTCACAATGACCAACAATAACCTTCTTAAACCAGGTCAGTAAGAAATCAGAACAGTAAGAAACAGATCAAACCAGCTCAAGACCAGTAAGAACCAACTTAAACCAGCCAATGACAAACAATAACCAGCTCAAGACCAGTAAGAACCATCTTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040911 lncRNA downstream 195367 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 454967 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042295 lncRNA downstream 519427 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042293 lncRNA downstream 521812 2795028 ~ 2825701 (-) True XLOC_020734
TCONS_00042294 lncRNA downstream 540486 2799465 ~ 2807027 (-) True XLOC_020735
TCONS_00042298 lncRNA upstream 392702 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042299 lncRNA upstream 535723 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042300 lncRNA upstream 1385123 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 1397223 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 1434423 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00040920 mRNA downstream 2900 3336723 ~ 3344613 (-) True XLOC_020746
TCONS_00040916 mRNA downstream 48158 3262413 ~ 3299355 (-) False XLOC_020745
TCONS_00040918 mRNA downstream 48413 3263428 ~ 3299100 (-) False XLOC_020745
TCONS_00040917 mRNA downstream 63490 3263428 ~ 3284023 (-) False XLOC_020745
TCONS_00040919 mRNA downstream 71625 3273344 ~ 3275888 (-) True XLOC_020745
TCONS_00040921 mRNA upstream 41463 3389347 ~ 3564563 (-) False XLOC_020748
TCONS_00040922 mRNA upstream 42026 3389910 ~ 3595439 (-) False XLOC_020748
TCONS_00040923 mRNA upstream 100040 3447924 ~ 3449282 (-) False XLOC_020748
TCONS_00040925 mRNA upstream 562726 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040928 mRNA upstream 562847 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040899 other downstream 2117491 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 2187764 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 2530106 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 3000099 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 247384 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 963919 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 1471526 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 1480072 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 1550702 4898586 ~ 4899116 (-) True XLOC_020764