RNA id: TU1230355


Basic Information

Item Value
RNA id TU1230355
length 441
RNA type TUCP
GC content 0.59
exon number 2
gene id G1081055
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 48418421 ~ 48418884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaattttacccctttttctccccaatttcgtcgtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaaccaaccaagccgcactgcttctttaacacagcgcacatccaacccggaagccagccgcaccaatgcgccggaggaaacaccgtgcacctggacaccttggttagcgtacactgcgcccagcccgccacaggagtcgctggtgcgcgatgaggccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaacccaaggactctgatggcacagctggcgctgcagtacagcacccttaaccactgcgccacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1230326 lncRNA downstream 40416 48377778 ~ 48378005 (-) True G1081027
TU1230325 lncRNA downstream 43022 48375080 ~ 48375399 (-) True G1081026
TU1230290 lncRNA downstream 99295 48318897 ~ 48319126 (-) True G1080992
TU1230281 lncRNA downstream 114849 48303337 ~ 48303572 (-) True G1080983
TU1230278 lncRNA downstream 118498 48299391 ~ 48299923 (-) True G1080980
TU1230437 lncRNA upstream 150471 48569355 ~ 48583446 (-) True G1081134
TU1230478 lncRNA upstream 154461 48573345 ~ 48589829 (-) True G1081174
TU1230497 lncRNA upstream 177736 48596620 ~ 48597874 (-) True G1081191
TU1230496 lncRNA upstream 179250 48598134 ~ 48601933 (-) True G1081190
TU1230544 lncRNA upstream 240797 48659681 ~ 48659880 (-) True G1081235
XM_021623961.2 mRNA downstream 476382 47911648 ~ 47942039 (-) False LOC110537706
XM_021623962.2 mRNA downstream 476382 47911648 ~ 47942039 (-) False LOC110537706
XM_021623963.2 mRNA downstream 476382 47911648 ~ 47942039 (-) False LOC110537706
XM_021623964.2 mRNA downstream 476382 47911648 ~ 47942039 (-) False LOC110537706
XM_021623965.2 mRNA downstream 476382 47911648 ~ 47942039 (-) False LOC110537706
XM_021625880.2 mRNA upstream 803017 49221901 ~ 49228404 (-) True LOC110538906
XM_021624007.2 mRNA upstream 891337 49310221 ~ 49390288 (-) False LOC110537714
XM_021624014.2 mRNA upstream 891337 49310221 ~ 49432630 (-) False LOC110537714
XM_036937704.1 mRNA upstream 891337 49310221 ~ 49432631 (-) False LOC110537714
XM_021624011.2 mRNA upstream 891337 49310221 ~ 49506346 (-) False LOC110537714
TU1229609 other downstream 495975 47914551 ~ 47922446 (-) True LOC110537706
TU1227962 other downstream 1601356 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 2212333 46202604 ~ 46206088 (-) True G1078323
TU1225874 other downstream 3265084 45133852 ~ 45153337 (-) True gria4b
TU1225480 other downstream 3817533 44546519 ~ 44600888 (-) False LOC110537661
TU1230892 other upstream 482524 48901408 ~ 48905274 (-) True G1081571
TU1231158 other upstream 569128 48988012 ~ 48988353 (-) True G1081813
TU1231174 other upstream 590465 49009349 ~ 49010152 (-) True G1081829
TU1232115 other upstream 1258548 49677432 ~ 49680803 (-) False G1082693
TU1232723 other upstream 1865615 50284499 ~ 50285313 (-) True G1083278

Expression Profile