RNA id: TCONS_00040923


Basic Information

Item Value
RNA id TCONS_00040923
length 508
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_020748
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3389347 ~ 3680725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTATCGAACAGTGGCCTATGAAGCAGGAGGGACCAAAGCCCCTCTCCTTTGGGGAGAAAATGGTTGCAAATGCGAACATTCTGTCAGTCTTCTTTCCCTTCGGTCTGTATGTCCTTTTTTTTCATTCCTAAAGTGTCTTTCTCAATTTGTTCTCTCCATTCACTCCTGTACAGATGTTCCTAGGAACTTCACTGTAAAGCTGGTCACCAAGACAACAGTTCTGCTTTCCTGGAAGTTCTATGATAGCCGTTTCCCATATAAATGCACGATCGAGTACCACCGGCAGAAGTCTGACATTGACGCGAGGATGACGAAAACTCTCATCACAAACTTGCGACCCAACACAACCTATGAGTTCAGAATCAGCTGCCAGGACAGTAGCGATGGTGGACCCAAACACAAGCTTGTTGCCCGAACTGCGCCACATATTCAGATCCGAAAGCCTGAGTTAGACCTGAAAAGAGAGTCAGAGAGTACACTGACCATTGTCTTCCCACCGCTGGAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0016311 dephosphorylation biological_process
GO:0021772 olfactory bulb development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020107-3 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within olfactory bulb development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and nervous system. Orthologous to human PTPRS (protein tyrosine phosphatase receptor type S).

Ensembl:

ensembl_id ENSDART00000136798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042297 lncRNA downstream 100040 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 295778 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 555378 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042295 lncRNA downstream 619838 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042294 lncRNA downstream 640897 2799465 ~ 2807027 (-) True XLOC_020735
TCONS_00042298 lncRNA upstream 291304 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042299 lncRNA upstream 434325 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042300 lncRNA upstream 1283725 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 1295825 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 1333025 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00040920 mRNA downstream 103311 3336723 ~ 3344613 (-) True XLOC_020746
TCONS_00040916 mRNA downstream 148569 3262413 ~ 3299355 (-) False XLOC_020745
TCONS_00040925 mRNA upstream 461328 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040928 mRNA upstream 461449 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040927 mRNA upstream 461449 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040926 mRNA upstream 461449 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040929 mRNA upstream 461449 3910731 ~ 3914222 (-) True XLOC_020751
TCONS_00040899 other downstream 2217902 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 2288175 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 2630517 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 3100510 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 145986 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 862521 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 1370128 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 1378674 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 1449304 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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