RNA id: TCONS_00040924


Basic Information

Item Value
RNA id TCONS_00040924
length 277
RNA type processed_transcript
GC content 0.59
exon number 2
gene id XLOC_020748
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3389347 ~ 3680725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttgctttgctttacaTGGATGCGCCGTTGAGAGGAATTATATGGTCGCACCGCATCTGCATCGATCCCAAGTGAAGTTGCGTGGACGCGCGTGGAAGAGTTAGTGCCAAACGTCCAGCGTGCCGACCCCTCGTCTCCAGCCTGCGGGGCCGCCGGCTCTCCAGCCAGGTCAAAGGTCATCTGCGTCATGATGCCAACCGGTCACCTGCCCATCCTGCTCTCCCTGAGCGCCCTGCTGCTGTCTCCGCTGCTCACCGGCTCCTTAGCCTTATGT

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0016311 dephosphorylation biological_process
GO:0021772 olfactory bulb development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153634

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042297 lncRNA downstream 247384 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 443122 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 702722 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042295 lncRNA downstream 767182 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042293 lncRNA downstream 769567 2795028 ~ 2825701 (-) True XLOC_020734
TCONS_00042298 lncRNA upstream 59861 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042299 lncRNA upstream 202882 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042300 lncRNA upstream 1052282 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 1064382 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 1101582 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00040921 mRNA downstream 30705 3389347 ~ 3564563 (-) False XLOC_020748
TCONS_00040923 mRNA downstream 145986 3447924 ~ 3449282 (-) False XLOC_020748
TCONS_00040920 mRNA downstream 250655 3336723 ~ 3344613 (-) True XLOC_020746
TCONS_00040916 mRNA downstream 295913 3262413 ~ 3299355 (-) False XLOC_020745
TCONS_00040918 mRNA downstream 296168 3263428 ~ 3299100 (-) False XLOC_020745
TCONS_00040925 mRNA upstream 229885 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040928 mRNA upstream 230006 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040927 mRNA upstream 230006 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040926 mRNA upstream 230006 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040929 mRNA upstream 230006 3910731 ~ 3914222 (-) True XLOC_020751
TCONS_00040899 other downstream 2365246 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 2435519 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 2777861 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 3247854 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040930 other upstream 631078 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 1138685 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 1147231 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 1217861 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 2029278 5710003 ~ 5713793 (-) False XLOC_020792

Expression Profile

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