RNA id: TU1231158


Basic Information

Item Value
RNA id TU1231158
length 342
RNA type TUCP
GC content 0.48
exon number 1
gene id G1081813
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 48988012 ~ 48988353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgaggataatacagtaccACCAATGCGGCTCGCTACCAAGAActgccccctctccttctccgtggctgacaagagtaaaacattgaaacatgtttaccctcacaaggctgctggccccacatgcttcaagatggccaccattgttcctgtaccaaataaggcaaagataactgaactaaatgactatcacccggtagcactcacttctgtcatcatgaagtgctttgagagactagtcaaggatcatatcacctccaccttacctgccaccctagacccacttcagtttgcataccgccccaaaaggtccacagacaatgcaattgcCATTACACTGCAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1231157 lncRNA downstream 72 48987723 ~ 48987940 (-) True G1081812
TU1231155 lncRNA downstream 1180 48986603 ~ 48986832 (-) True G1081810
TU1231154 lncRNA downstream 2672 48984948 ~ 48985340 (-) True G1081809
TU1231144 lncRNA downstream 19002 48968806 ~ 48969010 (-) True G1081799
TU1230962 lncRNA downstream 37436 48950129 ~ 48950576 (-) True G1081641
TU1231175 lncRNA upstream 21845 49010198 ~ 49010553 (-) True G1081830
TU1231270 lncRNA upstream 146000 49134353 ~ 49134625 (-) True G1081922
TU1232063 lncRNA upstream 216570 49204923 ~ 49209752 (-) True G1082660
TU1232208 lncRNA upstream 374016 49362369 ~ 49362858 (-) True G1082779
TU1232400 lncRNA upstream 624794 49613147 ~ 49613816 (-) True G1082969
XM_021623968.2 mRNA downstream 1045973 47911648 ~ 47942039 (-) False LOC110537706
XM_021625880.2 mRNA upstream 233548 49221901 ~ 49228404 (-) True LOC110538906
XM_021624007.2 mRNA upstream 321868 49310221 ~ 49390288 (-) False LOC110537714
XM_021624014.2 mRNA upstream 321868 49310221 ~ 49432630 (-) False LOC110537714
XM_036937704.1 mRNA upstream 321868 49310221 ~ 49432631 (-) False LOC110537714
XM_021624011.2 mRNA upstream 321868 49310221 ~ 49506346 (-) False LOC110537714
TU1230892 other downstream 82738 48901408 ~ 48905274 (-) True G1081571
TU1230355 other downstream 569128 48418421 ~ 48418884 (-) True G1081055
TU1229609 other downstream 1065566 47914551 ~ 47922446 (-) True LOC110537706
TU1227962 other downstream 2170947 46816443 ~ 46817065 (-) True G1078783
TU1227478 other downstream 2781924 46202604 ~ 46206088 (-) True G1078323
TU1231174 other upstream 20996 49009349 ~ 49010152 (-) True G1081829
TU1232115 other upstream 689079 49677432 ~ 49680803 (-) False G1082693
TU1232723 other upstream 1296146 50284499 ~ 50285313 (-) True G1083278
TU1233718 other upstream 1840051 50828404 ~ 50829115 (-) True G1084224
TU1234449 other upstream 2488064 51476417 ~ 51476771 (-) True G1084908

Expression Profile