RNA id: TU1231175


Basic Information

Item Value
RNA id TU1231175
length 356
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1081830
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49010198 ~ 49010553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttctttttacttttaggttagtattgtggagtaactacaatgttgttgatccatccaaagttctctcatatcacaaccattaaactctgtaactgttttaaaatgaccaatagcctcatggtgaaatctctgagcagtttccttcttcTCCTTAATCTCAaatgacgcctgtatctttgtagtgactgggtgtattgatatacagtgccttgcgaaagtattcggcccccttgaacttcgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1231157 lncRNA downstream 22258 48987723 ~ 48987940 (-) True G1081812
TU1231155 lncRNA downstream 23366 48986603 ~ 48986832 (-) True G1081810
TU1231154 lncRNA downstream 24858 48984948 ~ 48985340 (-) True G1081809
TU1231144 lncRNA downstream 41188 48968806 ~ 48969010 (-) True G1081799
TU1230962 lncRNA downstream 59622 48950129 ~ 48950576 (-) True G1081641
TU1231270 lncRNA upstream 123800 49134353 ~ 49134625 (-) True G1081922
TU1232063 lncRNA upstream 194370 49204923 ~ 49209752 (-) True G1082660
TU1232208 lncRNA upstream 351816 49362369 ~ 49362858 (-) True G1082779
TU1232400 lncRNA upstream 602594 49613147 ~ 49613816 (-) True G1082969
TU1232120 lncRNA upstream 608022 49618575 ~ 49673210 (-) True LOC110537716
XM_021623968.2 mRNA downstream 1068159 47911648 ~ 47942039 (-) False LOC110537706
XM_021625880.2 mRNA upstream 211348 49221901 ~ 49228404 (-) True LOC110538906
XM_021624007.2 mRNA upstream 299668 49310221 ~ 49390288 (-) False LOC110537714
XM_021624014.2 mRNA upstream 299668 49310221 ~ 49432630 (-) False LOC110537714
XM_036937704.1 mRNA upstream 299668 49310221 ~ 49432631 (-) False LOC110537714
XM_021624011.2 mRNA upstream 299668 49310221 ~ 49506346 (-) False LOC110537714
TU1231174 other downstream 46 49009349 ~ 49010152 (-) True G1081829
TU1231158 other downstream 21845 48988012 ~ 48988353 (-) True G1081813
TU1230892 other downstream 104924 48901408 ~ 48905274 (-) True G1081571
TU1230355 other downstream 591314 48418421 ~ 48418884 (-) True G1081055
TU1229609 other downstream 1087752 47914551 ~ 47922446 (-) True LOC110537706
TU1232115 other upstream 666879 49677432 ~ 49680803 (-) False G1082693
TU1232723 other upstream 1273946 50284499 ~ 50285313 (-) True G1083278
TU1233718 other upstream 1817851 50828404 ~ 50829115 (-) True G1084224
TU1234449 other upstream 2465864 51476417 ~ 51476771 (-) True G1084908
TU1234432 other upstream 2501587 51512140 ~ 51517079 (-) True LOC110537745

Expression Profile