RNA id: TCONS_00040930


Basic Information

Item Value
RNA id TCONS_00040930
length 422
RNA type processed_transcript
GC content 0.51
exon number 2
gene id XLOC_020752
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4311803 ~ 4313118 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCACAAACTCAGTTCGTGAAGTTCTGAGTGCTCTTACAGGGATATTTCTAGCCTCAGCTGCCTCTGTAGGGGCCGAAGTGAAGAAATGTGACATGACACCTGCGCTCATTACCTGCTGAGGATCTTCATTAGCTCGGTGTGTGCGGTACATTGAGCTCGGATGACTTGCAGATTCAGATCTGCCAAAGAACAAGATGCAGAAATAAAGACGAGGCCAAACAGCTTATGAAACGGCTGTGCCTAAAGAGTCGAGGACACGAAAGGATTCATAAGAGTCATTATCCAGTCCAGACGTGCTCCGCATCTGGATCTCCATCTTTGAAGCcgctgatgttgttttgaagtcttcAGATGAGACGGAGCCCCGGCGCGTCGACAGCGGGTTTCTGCGTGACCATTGATGACCCCGTCGCCGCGGCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042299 lncRNA downstream 425119 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 570519 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 963919 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 1159657 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 1419257 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042300 lncRNA upstream 419889 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 431989 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 469189 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 506294 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 539944 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00040925 mRNA downstream 397581 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040929 mRNA downstream 397581 3910731 ~ 3914222 (-) True XLOC_020751
TCONS_00040928 mRNA downstream 397641 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040927 mRNA downstream 397641 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040926 mRNA downstream 397641 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040931 mRNA upstream 487 4313605 ~ 4398069 (-) False XLOC_020753
TCONS_00040932 mRNA upstream 2138 4315256 ~ 4407871 (-) True XLOC_020753
TCONS_00040933 mRNA upstream 95525 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040934 mRNA upstream 211249 4524367 ~ 4644484 (-) False XLOC_020755
TCONS_00040935 mRNA upstream 281347 4594465 ~ 4649238 (-) True XLOC_020755
TCONS_00040924 other downstream 631078 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3081781 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3152054 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3494396 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 3964389 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040947 other upstream 506292 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 514838 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 585468 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 1396885 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 1432185 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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