RNA id: TCONS_00004003


Basic Information

Item Value
RNA id TCONS_00004003
length 2082
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_002064
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20392083 ~ 20402161 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAAGAGAGATACATTTTAAGATCTGTCATTTTAAGaatgacattattttttatttatcatccttatttaaacatgatttaaatttgtctataaaagatatatttctgtatttctcgAATGATGATCATGCTCTCGATCTTATTGTAAAATTTTTTGTGTTACACTGtacattttttatacacaaaaataagttTCTAAAACAATAACTATTTTTAATACTTTCCTTGTTGAAATGTCGTACAATATTGAATCTCttaagcttattaataataagaagaataataagtttcttaaagcttatgacaatattttttcttaatgattgaggctgtgtattttttttctctctgtctttcttattttttgttattgtatttttcttcaatgcagtgatgttattattcgtgtattcaataatttttttttttttaaatccctttAAAATTAGTCATAACCATTGTTATTTCACTCCTGACCAGCAGAGGGGACTAAAAGCCTTCAAGGcgaagtactttttttttttatttttttatttttttattatttttttttttttcaaggcgAAGTATTTCGTGACGTCGGAGATGTCAGTTTACCTCATTGGTTTAACTCAGTGTTGTGGTGTTTTCGGCTTGCTCGATTTAGGATTTTTTTCAACTGGCATTTAATCGCTTTTAAAGGTCTTTAATGTGGTATACATGTGCATAAACCAGTCGCCTTTTAAAGCGCGTATATTTTGATAAGAAAAGACTAGTGTGCTAAGCTAGTTGCTAATGTTGAGTTAAGTGAGTTCAAATTCGCTGTAAGATTTACGAGTTGATGTTTGTCATTGGTTCTCTGATATACTTCGCTTTTTCTTGACTGAAAGTATCTTCTCCGAGTCCCTGGATTAAAATCGTCCATCCTGGCTCATCCTTGCATCAATGGCTCTTACCTCCCTAAACAAGAGACTGGATTGGTCCATACAGTTCTTGAGGAGCTGGAGGTATTTCTTCAAAGAAATGAGCGGAAAAGCGTTCTACTCTTCCCGCCTTTGCCAAGCCGATTTCGCTTCTTGATTCACGAAACCACCTTGAATCACCCTGACCTCAGCACCTTCTCTGTGGGCGAGGGCTGTGCTCGCAGAGTTGTCGTGTGCTATTCTGACTTCCGGTTGTCAGAACAGGATCAACAAGATGCAAAAGGCAGTTCCTATAACCGAGCATGCAATCAGGACAGGGTAATAGGCGACAAAGGCAACATATCCAACAACAGACGGAGAGACAAAAAGCCGGACAAGGCTATTTATGTTCCACGAGTTATTAGACACAAGGTAGATCCGGAACAACCAAATCGCAAGGAATCATCAGAGGAATCCTGCTCAAACAATGATATTGTCGCCAATCCAAGGCCAAAAGAGGACCCCACTCACCAACCACTCGCAGATCATGAATTTGTGCAACTTTCAAAGTCTGGACCTTCTCCGTGGCCTCCAGAATGGGACGAGACTGTGTCCTTGTTAATGTCTTTGAAATTAGACAACCAAGAGGATGAAAATGGTGCTAACAACACAGTCCTTCCCACTGATGTGAAACTCCAGGAGGAGGGCATTGATGAAAGTTTGATCTCTGAGATCAAAGCCAAAGTCAAAGAAAAGGACATCACTATAGTGAACACCTGCAGTGATTTCCCTGCATATGCAAACATCTGGCTAGACCCTGAGGAATTTGGCCATGTAATTGAGATTTATGACTTTCCCGTCATATTTAAAACTGAAGACATTCTTGATGCATTTGCAGACTACAGTGAAGGGGGGATGAAGGTCAAGTGGGTTGATAACAATCATGCTCTTGGTATTTTTTCTAATCAGTTGGCAGCTACAGAGGCGCTTTCTATTGAACATCCGCTACTGAAGACCCGTCCGCTGCTAGAGGGGAGCGAGAAAGCAAAGTGGAAAGCAGCCAGACGAGCAGAGTTCATGCAGCCGGTGAAGGAAAGGCCGCGTACAGACGCAGTAGTGGCTCGCAGGATGATGACAGACGTCCTGGATATCAACTATTATACAATCCAGACTCAACAGAAGTTGCAAATCTTATTTTAG

Function

GO:

id name namespace
GO:0035145 exon-exon junction complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-146 Predicted to enable nucleic acid binding activity. Orthologous to human R3HCC1 (R3H domain and coiled-coil containing 1).

Ensembl:

ensembl_id ENSDART00000166867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005870 lncRNA upstream 10770 20377088 ~ 20381313 (+) True XLOC_002063
TCONS_00003998 lncRNA upstream 20385 20364406 ~ 20371698 (+) False XLOC_002062
TCONS_00004000 lncRNA upstream 20385 20364460 ~ 20371698 (+) False XLOC_002062
TCONS_00004001 lncRNA upstream 20385 20364620 ~ 20371698 (+) False XLOC_002062
TCONS_00004002 lncRNA upstream 20385 20369729 ~ 20371698 (+) True XLOC_002062
TCONS_00005871 lncRNA downstream 46982 20448467 ~ 20452630 (+) True XLOC_002065
TCONS_00005704 lncRNA downstream 100291 20501776 ~ 20502178 (+) True XLOC_002066
TCONS_00005872 lncRNA downstream 241850 20643335 ~ 20644918 (+) False XLOC_002069
TCONS_00005873 lncRNA downstream 242375 20643860 ~ 20645459 (+) True XLOC_002069
TCONS_00005874 lncRNA downstream 263531 20665016 ~ 20667861 (+) True XLOC_002070
TCONS_00003996 mRNA upstream 19814 20364009 ~ 20372269 (+) False XLOC_002062
TCONS_00003997 mRNA upstream 19941 20364155 ~ 20372142 (+) False XLOC_002062
TCONS_00003995 mRNA upstream 134908 20256454 ~ 20257175 (+) True XLOC_002061
TCONS_00003993 mRNA upstream 157700 20180163 ~ 20234383 (+) False XLOC_002060
TCONS_00003991 mRNA upstream 245539 20128267 ~ 20146544 (+) False XLOC_002059
TCONS_00004005 mRNA downstream 188484 20589969 ~ 20609075 (+) False XLOC_002067
TCONS_00004006 mRNA downstream 188705 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004007 mRNA downstream 207191 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00004008 mRNA downstream 227213 20628698 ~ 20632779 (+) False XLOC_002068
TCONS_00004009 mRNA downstream 228959 20630444 ~ 20632575 (+) True XLOC_002068
TCONS_00003999 other upstream 21994 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00003994 other upstream 158038 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003965 other upstream 1457542 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 1495479 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 2141015 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00004010 other downstream 282551 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 835079 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 995835 21397320 ~ 21399705 (+) False XLOC_002077
TCONS_00004014 other downstream 995882 21397367 ~ 21404971 (+) False XLOC_002077
TCONS_00004015 other downstream 998230 21399715 ~ 21402166 (+) True XLOC_002077

Expression Profile

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