RNA id: TCONS_00040949


Basic Information

Item Value
RNA id TCONS_00040949
length 989
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_020764
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4819410 ~ 4899294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttactagGCCGTCTAAAAGTGTGAGGGGTTTCACGGTTTCCAGGAAGCTCGCGATCGCTTAGTTTCATTCTCACTGTCGAGTTTATTATTGGGTTTTGAATGCTCTACTGTGGATGAGTCTTGTGTTCTTCGGTCTCTTGATTTCTCCTCATTTCTCTTTATTCTCTGTTGTTTTCAGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTtcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGCGATCCGATGGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAGACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGTTTGACAGAAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTAGCTCAGTACAAAAAGCTTGATGTATCACATTTTTATATACAATGAtatttttcatgtttgttttgtaGTGTTACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTTAGATGTATTTGCTTGTCTTTATCAATAAAGTTTTCTCTCTCTAAATTTAAATTCAGCCTCT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135208

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042303 lncRNA downstream 7810 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 44932 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 81514 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042300 lncRNA downstream 92619 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042299 lncRNA downstream 941272 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00040965 lncRNA upstream 106042 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 160591 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 241236 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 368229 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 413677 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00040942 mRNA downstream 14611 4782287 ~ 4813345 (-) False XLOC_020761
TCONS_00040945 mRNA downstream 15201 4799418 ~ 4812755 (-) True XLOC_020761
TCONS_00040944 mRNA downstream 29218 4797508 ~ 4798738 (-) True XLOC_020763
TCONS_00040943 mRNA downstream 43298 4783644 ~ 4784658 (-) True XLOC_020762
TCONS_00040940 mRNA downstream 47946 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040956 mRNA upstream 9619 4908913 ~ 4913031 (-) True XLOC_020769
TCONS_00040957 mRNA upstream 27483 4926777 ~ 4931063 (-) True XLOC_020770
TCONS_00040958 mRNA upstream 40265 4939559 ~ 4944795 (-) True XLOC_020771
TCONS_00040959 mRNA upstream 63076 4962370 ~ 4989917 (-) False XLOC_020772
TCONS_00040960 mRNA upstream 63205 4962499 ~ 4989803 (-) False XLOC_020772
TCONS_00040930 other downstream 514838 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1147231 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3597934 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3668207 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 4010549 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040987 other upstream 810709 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 846009 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 846911 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 848307 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 971741 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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