RNA id: TU1238791


Basic Information

Item Value
RNA id TU1238791
length 225
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1089013
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55027664 ~ 55027888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctatatttaatgaagaaagaacactgaaacaaacttacaaaacaacaaacgaatgTGACGCTATATAATCTAaatgtgcagacacaggcaaatagacatagataataacccacgaaatacccaaagaagatggctgcctaaatatggttctcaatcagagacaacgataaacagctgcctataattgagaaccaatctaggcaaccatagacatgcataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1238789 lncRNA upstream 2591 55024808 ~ 55025073 (+) True G1089011
TU1238770 lncRNA upstream 26233 54992764 ~ 55001431 (+) True G1088992
TU1238646 lncRNA upstream 108668 54890174 ~ 54918996 (+) True G1088883
TU1238666 lncRNA upstream 138094 54867931 ~ 54889570 (+) True G1088896
TU1238625 lncRNA upstream 186026 54838201 ~ 54841638 (+) True G1088877
TU1238837 lncRNA downstream 86306 55114194 ~ 55114513 (+) True G1089056
TU1238664 lncRNA downstream 161862 55189750 ~ 55205645 (+) True G1088894
TU1238657 lncRNA downstream 165647 55193535 ~ 55196940 (+) True G1088887
TU1238944 lncRNA downstream 296721 55324609 ~ 55325524 (+) True G1089159
TU1238977 lncRNA downstream 348237 55376125 ~ 55398473 (+) False LOC110537800
XM_021624177.2 mRNA upstream 139030 54879673 ~ 54888634 (+) False LOC110537791
XR_005035008.1 mRNA upstream 139030 54879673 ~ 54888634 (+) False LOC110537791
XM_036937822.1 mRNA upstream 139030 54879674 ~ 54888634 (+) False LOC110537791
XM_021624178.2 mRNA upstream 139030 54879912 ~ 54888634 (+) True LOC110537791
XM_036937802.1 mRNA upstream 567062 54439886 ~ 54460602 (+) True ppp2r2bb
XM_021622407.2 mRNA downstream 19272 55047160 ~ 55052488 (+) False LOC100136153
XM_036936676.1 mRNA downstream 19272 55047160 ~ 55052488 (+) False LOC100136153
NM_001124440.1 mRNA downstream 21339 55049227 ~ 55050456 (+) True LOC100136153
XM_036937825.1 mRNA downstream 37233 55065121 ~ 55209632 (+) False LOC110537795
XM_036937826.1 mRNA downstream 37233 55065121 ~ 55209632 (+) False LOC110537795
TU1237658 other upstream 746943 54274306 ~ 54280721 (+) True LOC110538908
TU1237606 other upstream 878702 54109690 ~ 54148962 (+) True G1087914
TU1235839 other upstream 2370169 52649604 ~ 52657495 (+) True G1086237
TU1231639 other upstream 5346860 49679023 ~ 49680804 (+) True G1082266
TU1231371 other upstream 5727317 49291405 ~ 49300347 (+) True LOC110537713
TU1241153 other downstream 1697719 56725607 ~ 56726003 (+) True G1091217
TU1241171 other downstream 1724530 56752418 ~ 56752947 (+) True G1091235
TU1241421 other downstream 2087937 57115825 ~ 57117927 (+) True LOC110537831
TU1241907 other downstream 2871583 57899471 ~ 57914832 (+) True LOC110537841
TU1241903 other downstream 3188267 58216155 ~ 58222190 (+) False LOC118937686

Expression Profile