RNA id: TCONS_00040956


Basic Information

Item Value
RNA id TCONS_00040956
length 1174
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_020769
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4908913 ~ 4913031 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGATTCAGTTACTCTGAGGTCTGACCTCACTGATCTACAGAAGGATGATCAGATTAAATGGTTTGcatatgaagatattttaatagcAGAAATCAATGAACAGACCAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaagaaaactggatctctgaccatcacagaCATCACAACTGAACATACTGGAGTTTATAAACTACAGAACAAAGAGATTATCCTCAGGGCAGTCTATCTTATTGTCTATGTCACTCTGAGCTCTGGTGTTACCAAAATAAAGGATGATGATCAGATTCAGTGGAGGTTTGGAACAAAAGAGACTTTAATAGCAGAAATCAATAAACAGACCAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGAGTTTATAAAGCACAAACCAACAATAAAATCTACACTGTGAAACTTGCACTTTGGAAAGAGAATAAAGTGTTTGTGGAAATGGGGGATTCAGTCACTCTGAACACTGATTATATTAACATCATGAATGATGATCGGGTTCAGTGGAGGTTTGGAGATGGAGACACTTTAATAGCAGAATTCAATGAACATACTAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaagaaaactggatctctgaccattaCAAACATCACAGCTGAACATGGTGGAGTTTATAAACTACAGACCAACACTGAAGTCAACTCTGTTACACTCGAAGTGAACAGGAAGGAAGTGTCTGTGAAAACAGGAGAGTCAGTCACTTTGCACACTGGTTTCACTGAAATTAAGGATGATGATCTGATTCAGTGGAGGTTTGCAAATATCCACTCACTGATAGctgaaatcaataaacaaaccaaCAGATTCTCGGTATTTGCTGATGGTCCTGAtgggagattcagagacagactgaaactggacaagaaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGACGTTATAAACTACAGAGCGACTATCTTCATATTTCTTTCTATCTCACTGTCTTTGGTGAGTTACAATTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000132062

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042305 lncRNA downstream 31167 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 55098 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042303 lncRNA downstream 88767 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 125889 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 162471 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00040965 lncRNA upstream 92305 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 146854 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 227499 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 354492 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 399940 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00040954 mRNA downstream 15976 4885017 ~ 4892937 (-) True XLOC_020768
TCONS_00040953 mRNA downstream 21512 4884980 ~ 4887401 (-) False XLOC_020768
TCONS_00040952 mRNA downstream 28310 4876634 ~ 4880603 (-) False XLOC_020764
TCONS_00040946 mRNA downstream 30901 4819410 ~ 4878012 (-) False XLOC_020764
TCONS_00040957 mRNA upstream 13746 4926777 ~ 4931063 (-) True XLOC_020770
TCONS_00040958 mRNA upstream 26528 4939559 ~ 4944795 (-) True XLOC_020771
TCONS_00040959 mRNA upstream 49339 4962370 ~ 4989917 (-) False XLOC_020772
TCONS_00040960 mRNA upstream 49468 4962499 ~ 4989803 (-) False XLOC_020772
TCONS_00040961 mRNA upstream 49629 4962660 ~ 4990045 (-) False XLOC_020772
TCONS_00040947 other downstream 9619 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 9619 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 9797 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 595795 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1228188 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 796972 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 832272 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 833174 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 834570 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 958004 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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