RNA id: TCONS_00040966


Basic Information

Item Value
RNA id TCONS_00040966
length 1324
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_020774
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5036179 ~ 5054773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGACGGCAGGAACGCAGTGCGTCGCTAAAAAGGACCACTGCAAACCCAAAGATGGTGAAATCTCGTATCACAAAGGCGACATCTTGACTCTCGTGGGGCCTGGAATGAGAAAAGGAGAATACACTGCCAGACACAACACAACAGGGGAGGAAGGACAGGTTTCAGGCTCCAATCTCAGAGAAAGAGAAGCGCTGCGTATAGACCCAAAACTGAGCCTCATGCCATGGTTTCATGGCAAAATAGCCGGACAGCAAGCCGTGGACAAACTCAAGCCCACGGAAGACGGGCTTTTCTTGGTGCGGGAATCGGTTCGGCATCCTGGAGACTTCGTGCTGTGCGTTTGCTTCAGTCAGAAAGTGTTTCACTATCGCGTGATCTACCAGGACAATAAACTGACCATCGACAACATGCAGTTCTTCGACAACCTCATCGACATGATTGAGTTTTACAGCAGAAATCGAGGCGCCATCGCTACATTATTACTAAAACCCAAGAAGAAGGAAGGCCTGAAATCTGCCGAGACCAAGCTGCTGAAATCCGGGTGGCTTCTTGATCTCTCAAAGCTGACGTTAGGAGAAATCATCGGGGAAGGAGAGTTCGGTGCGGTGTTTGCAGGTGAATACACCGGACAGCGAGTTGCAGTTAAAATCATCAAATGTGATGTGACGGCGCAGGCTTTCCTCGAGGAGACTTCAGTCATGACAAACCTCCATCATAAGAATCTGGTGCCGTTATTAGGAGTTATTCTGCATAACGGGCTTCATATAGTCACAGAGTTAATGACGAAGggGAATCTGGTGAATTTTCTTCGTTCACGAGGACGTTTCGCTGTTAGTGTGATTCAGCTGCTGCGATTCGCATTagATGTATGTGAAGGAATGGAGCACCTGGAGTCAAAGAAGCTCCTGCATCGAGATCTGGCTGGACGCAACATTCTCGTCTCTGAAGACGGTGTCGCCAAAATCAGTGATTTCGGTTTGGCGAGGGTCGGTTCAATGGCGGTCGACAACTCAAAGTTACCCGTGAAGTGGACAGCACCAGAAGCCTTGAAGAATAAAAAATTCTCCACTCAGTCAGACGTCTGGAGTTACGGAGTGCTTTTATGGGAAATCTTCTCATACGGCAGACAACCGTATCCCAAAATGACTGTGAATGAGGTGAAGGAGTGTGTGGAAAAGGGTTACCGGATGGATCCTCCAGACGAGTGTCCCGCAGACGTTTACAGCATCATGACGTCCTGCTGGCAGACGGAGCCCAAGAAGAGGCCGTCGTTCCACAAACTGCGAGAGCGACTGGAGAAAGAGCTGAAACTGCACACATGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04722 Neurotrophin signaling pathway
ko01001 Protein kinases
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-070705-183 Predicted to enable non-membrane spanning protein tyrosine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human MATK (megakaryocyte-associated tyrosine kinase).

Ensembl:

ensembl_id ENSDART00000113521

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040965 lncRNA downstream 29449 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00042305 lncRNA downstream 158433 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 182364 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042303 lncRNA downstream 216033 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 253155 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00040970 lncRNA upstream 8196 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 88841 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 215834 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 261282 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00042308 lncRNA upstream 261282 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00040964 mRNA downstream 29378 4999256 ~ 5006801 (-) False XLOC_020773
TCONS_00040963 mRNA downstream 30060 4997784 ~ 5006119 (-) False XLOC_020773
TCONS_00040961 mRNA downstream 46134 4962660 ~ 4990045 (-) False XLOC_020772
TCONS_00040959 mRNA downstream 46262 4962370 ~ 4989917 (-) False XLOC_020772
TCONS_00040962 mRNA downstream 46265 4983543 ~ 4989914 (-) True XLOC_020772
TCONS_00040968 mRNA upstream 4599 5056288 ~ 5099824 (-) False XLOC_020775
TCONS_00040969 mRNA upstream 4601 5056290 ~ 5099824 (-) False XLOC_020775
TCONS_00040971 mRNA upstream 72225 5123914 ~ 5163133 (-) True XLOC_020776
TCONS_00040973 mRNA upstream 101772 5153461 ~ 5171829 (-) False XLOC_020778
TCONS_00040974 mRNA upstream 102845 5154534 ~ 5171362 (-) True XLOC_020778
TCONS_00040947 other downstream 136885 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 136885 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 137063 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 723061 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1355454 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 658314 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 693614 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 694516 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 695912 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 819346 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_11017331_11024754.mRNA True 1470 mRNA 0.47 9 CI01000030 11017331 ~ 11025102 (+)