RNA id: TU1243850


Basic Information

Item Value
RNA id TU1243850
length 275
lncRNA type intronic
GC content 0.56
exon number 1
gene id G1093678
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58890622 ~ 58890896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgctgtgatgtcgactctatggtcagggtgtggtgTGTGCtatggtgtcgagacttttgtcgggtgctgaggtgggctgttctgctggcttctctgtgggggtggccacctctctagtgggttgttctctgtcacacgccgtccccctcaacctctcctccgtcccccctcacctccatccccctcaacctctcctccaccagcagtctgatcctctcctcttgtgctctgttcttctcctgataATGCTCTTTCTTgtgttgaagttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1243708 lncRNA upstream 63172 58746638 ~ 58827450 (+) False LOC110538919
TU1243706 lncRNA upstream 63172 58817797 ~ 58827450 (+) False LOC110538919
TU1243722 lncRNA upstream 63172 58822927 ~ 58827450 (+) False LOC110538919
TU1243697 lncRNA upstream 63172 58824913 ~ 58827450 (+) True LOC110538919
TU1243656 lncRNA upstream 215815 58674579 ~ 58674807 (+) True G1093544
TU1243852 lncRNA downstream 2056 58892952 ~ 58893163 (+) True G1093680
TU1243887 lncRNA downstream 90360 58981256 ~ 58981520 (+) True G1093713
TU1243888 lncRNA downstream 91377 58982273 ~ 58982472 (+) True G1093714
TU1243889 lncRNA downstream 91739 58982635 ~ 58982914 (+) True G1093715
TU1243894 lncRNA downstream 95551 58986447 ~ 58987204 (+) True G1093719
LOC110538920 mRNA upstream 17171 58850736 ~ 58873451 (+) True LOC110538920
XM_036937899.1 mRNA upstream 66051 58691117 ~ 58824571 (+) False LOC110538919
XM_036937892.1 mRNA upstream 66053 58691117 ~ 58824569 (+) False LOC110538919
XM_036937893.1 mRNA upstream 66053 58691117 ~ 58824569 (+) False LOC110538919
XM_036937895.1 mRNA upstream 66053 58691117 ~ 58824569 (+) False LOC110538919
XM_021624301.2 mRNA downstream 44634 58935530 ~ 58959234 (+) False LOC110537868
XM_021624302.2 mRNA downstream 44639 58935535 ~ 58957128 (+) True LOC110537868
XM_021624305.2 mRNA downstream 70871 58961767 ~ 58975136 (+) True LOC110537870
XM_036939515.1 mRNA downstream 161433 59052329 ~ 59106006 (+) True LOC110537871
XM_036937902.1 mRNA downstream 342458 59233354 ~ 59343106 (+) False sez6l2
TU1241903 other upstream 668432 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 975790 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1772695 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2137675 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 2164619 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 650662 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1140107 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 1494768 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1805791 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1925595 60816491 ~ 60818897 (+) True G1095209

Expression Profile