RNA id: TCONS_00041935


Basic Information

Item Value
RNA id TCONS_00041935
length 631
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_020784
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5453243 ~ 5463115 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGGAGAAGTGTTGTGATGGTCTTCTCCAGCATCTCTGAGGGTCTGGTCCTCCTTCACCAGCCCACAGAATCCCCAGCTGAAGATGTTAATCCTGCACCAGCAGTAGTCTTCTCCATATTTAGCACACTTGCTGTCGGCTCGGCACTGTCTGCCCCAGTAGTCCACGTTCTCCTGAGGTGAACAGTACATGCTTTGGCTCTTTCCGTCTTCATCGGTGCTCTTGCACTTGTATTCGCCGCCGTCAGGCTTGCAGTCTTCTGCGCACAGCGTGCCGAGATGAGTAAAGAAAGTTTTCCCTTCACTCAGACACGGTGAACAGAAGAGcaggaggagaaagagagagactcgCAGACGCTCCATTCTTTCTGTCCAGAGGAGAATAAATGAAGTTTAGAGTCAGTGGAAGCATTAACCATTGTGTGGTGTTCGTATTTTGGTTACTGAGCCAGTGTTCATGCGTCTGGTGCACCCGCTAGAGTTTTGGCTTTCCAAATTAACACCATCAAACAATTTAGTGTTAAATTACTCAACAAATGTTTACTTAATCCCAATTACAAGCCATATGCACTGCAAACATGGTTAATTTTCCCTTTTACGTTTGTTCTGAGCTAGCAATTTTACTATACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042311 lncRNA downstream 137654 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00042310 lncRNA downstream 137661 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00042309 lncRNA downstream 137666 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042308 lncRNA downstream 137699 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00042307 lncRNA downstream 137758 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00041936 lncRNA upstream 161258 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA upstream 162510 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00042312 lncRNA upstream 238145 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00042313 lncRNA upstream 260213 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00042314 lncRNA upstream 397025 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00040978 mRNA downstream 11350 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040977 mRNA downstream 129761 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040976 mRNA downstream 201231 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040975 mRNA downstream 201238 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040973 mRNA downstream 281414 5153461 ~ 5171829 (-) False XLOC_020778
TCONS_00040979 mRNA upstream 20473 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040980 mRNA upstream 55199 5518314 ~ 5529241 (-) True XLOC_020786
TCONS_00040981 mRNA upstream 86619 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040982 mRNA upstream 168914 5632029 ~ 5655680 (-) True XLOC_020789
TCONS_00040983 mRNA upstream 192641 5655756 ~ 5661789 (-) False XLOC_020790
TCONS_00040947 other downstream 553949 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 553949 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 554127 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 1140125 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1772518 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 246888 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 282188 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 283090 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 284486 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 407920 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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