RNA id: TCONS_00040984


Basic Information

Item Value
RNA id TCONS_00040984
length 1575
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_020790
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5655756 ~ 5663354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACAGCACCGGTTTAGTGCCTGAAAGAAATGTTTTCATGCCGCAGGATGACATTTCAGGAAATTTGACAGATATTTACATTATAATACACAGATTTTAAACATGATGAATTGCTGACTCGAGCGGGAACGCGACCAAACGGAAAATCACCGGTTACATATTTGACGTGTGGCGACCTGACATATGAGGCTCTTCAATGAGGTTCAGAACAAACACTGTATTTCCAGGCAGCTTCGTCTCCACGTGTCTCTACCGACACCAGGGGTTCAACCCGGTCCAGTGGAGCCTACACAGATCATACTGCACCCAGCAGCAAAGCCCTAAAGATGAGCCAAATAAAACTACATCTGCTAAAGAGCGCACGGCGTCTGCATTAGCATATGCTGGAGAGCTGGGGAAACAGTGGGGACGCAATGCGGTGAAAACCACATCAGTGACCGTCAACTACTGGTGGGAGCGCTATGAAGAGTTTGTCGGGCTTAATGAAGTCCGAGATGCTCAGTCCAAAGTCACAGAGGCTGAGAAGGCTTTTATGGTTGCCAGAGGAATTGTAAGGGAAGCTCACACCAGCCTGGAGGCTCTACAAGTTCGTCTGAAAGAAGTGAGAGACCGATTGGACCGAGTGTCGCGTGAAGAGGCACATTATTTAGAGTTAGCAACACTTGAACACAAGCTACTGCAGGAAGAACGGCGCCTCAGAACATCCCACGAGAATGCAGAAGAAGCCGAGCGAGAGAAGTTCGCGCTCTTCTCCGCTGCGGTGCGTGAAAGCCACGACAAAGAAAGAACCAGGGCAGAACGCACCAAAAACTGGTCCATCATTGGCTCAGTGTTGGGTGCCATCATTGGCGTAATGGGCTCCACATACATAAACCGGGTACGTTTGCAGGAACTCAAAAGCTTGTTGCTGGAGGCTCAGAAGGGGCCGGTGAGTCTTCAGGAAGCAATCAAGGTGCAGGCCAGCTTACACAAAACGCAACAGGACGAACTCAGCAACCTCATCCACTCACTCAGGACGACTTTGAAAGGCAGCGGAGAAGATGCAAAAATTGGCAAGCCGGCCATCGTGCAACCAGCGGCCGCCGTTGTCCAATCTTCCACATCTGGTGCCTCGGAAGAAGCGATTCAAGAGATTCTCCAAAACAGCCAAAAAGCTCAAGGGCTCATCGAAAGCCTTAAACCACAACTAGAGCAAGTGTGGGAGAGTTTATCGAAGGTCGGGACAGAGCTGCAGACGGTGAAAACCACTCTACAGTCTCGTCCTTTAGAGAAGCCAGTCATTCAAACCCGAGGCACGCAGCTTTTTGTTTGCGATACTGAGACAGTCGTTCAAGGTCTCGGTCAAACGGAGAAGAGATTAGAGGCGCAGATCAACAAAACAAGTCTGTACAATACCGTGCTGACGTGCGCCGCGTTCGCCGTGACCGTGCCAGTTCTGTACGTATTGTTGAGAGGTACTTGAAAAGTATGCCGGCAATGTGCACTTTAGGGGCCAATTAATACACTAGAGGATAATGCAACTATTATTGTGAAGatgaaatttaattaaacattctGAGTACTGCTGTTCATGT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-200 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC51 (coiled-coil domain containing 51).

Ensembl:

ensembl_id ENSDART00000081774

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041936 lncRNA downstream 25941 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA downstream 26012 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00041935 lncRNA downstream 193907 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00042311 lncRNA downstream 341433 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00042310 lncRNA downstream 341440 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00042312 lncRNA upstream 37906 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00042313 lncRNA upstream 59974 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00042314 lncRNA upstream 196786 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00042315 lncRNA upstream 196786 5860140 ~ 5872272 (-) True XLOC_020798
TCONS_00042316 lncRNA upstream 226493 5889847 ~ 5894546 (-) False XLOC_020799
TCONS_00040982 mRNA downstream 1342 5632029 ~ 5655680 (-) True XLOC_020789
TCONS_00040981 mRNA downstream 104015 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040980 mRNA downstream 127781 5518314 ~ 5529241 (-) True XLOC_020786
TCONS_00040979 mRNA downstream 138905 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040978 mRNA downstream 215129 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040985 mRNA upstream 4017 5667371 ~ 5682494 (-) True XLOC_020791
TCONS_00040986 mRNA upstream 41205 5704559 ~ 5724085 (-) False XLOC_020792
TCONS_00040988 mRNA upstream 56466 5719820 ~ 5724131 (-) True XLOC_020792
TCONS_00040989 mRNA upstream 78819 5742173 ~ 5744491 (-) False XLOC_020794
TCONS_00040990 mRNA upstream 78872 5742226 ~ 5752009 (-) True XLOC_020794
TCONS_00040947 other downstream 757728 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 757728 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 757906 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 1343904 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1976297 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 46649 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 81949 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 82851 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 84247 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 207681 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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