RNA id: TCONS_00042320


Basic Information

Item Value
RNA id TCONS_00042320
length 277
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_020810
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6154675 ~ 6167952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCATTTTGCATGTTTCCTCAAACACGCTGGACCAGTAGTAAAGAGCGGATACAAACGAGGACACACCCAAAACTAACGTTTTTGTGTTCGCGTTGAAGAGACACCAACCAGTAAACACACAGAAACCCATATGCTAACAAGTCAGAGGAAACCTCGAGGAACTGCCAGAGATTATGTTAACCAATTTTGATGTTAGTCTCTCAAAATTAGCATCCTGAGTCTAAAGCCATCAAGACCTTCAAGgtttccagcttccttaaaaatatcatcttttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042319 lncRNA downstream 88419 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042318 lncRNA downstream 144853 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00040999 lncRNA downstream 235976 5909525 ~ 5918699 (-) True XLOC_020800
TCONS_00042317 lncRNA downstream 260047 5892746 ~ 5894628 (-) False XLOC_020799
TCONS_00042316 lncRNA downstream 260129 5889847 ~ 5894546 (-) False XLOC_020799
TCONS_00042321 lncRNA upstream 75790 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042322 lncRNA upstream 229461 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00041039 lncRNA upstream 359462 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00041938 lncRNA upstream 395694 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00042323 lncRNA upstream 528565 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00041010 mRNA downstream 10247 6104892 ~ 6144428 (-) True XLOC_020809
TCONS_00041007 mRNA downstream 72228 6073628 ~ 6082447 (-) False XLOC_020807
TCONS_00041008 mRNA downstream 72228 6074808 ~ 6082447 (-) True XLOC_020807
TCONS_00041006 mRNA downstream 87808 6065987 ~ 6066867 (-) True XLOC_020806
TCONS_00041004 mRNA downstream 99926 6026595 ~ 6054749 (-) True XLOC_020804
TCONS_00041013 mRNA upstream 15029 6182981 ~ 6194580 (-) False XLOC_020812
TCONS_00041012 mRNA upstream 15029 6182981 ~ 6194580 (-) False XLOC_020812
TCONS_00041014 mRNA upstream 20373 6188325 ~ 6194517 (-) True XLOC_020812
TCONS_00041015 mRNA upstream 43162 6211114 ~ 6219674 (-) False XLOC_020813
TCONS_00041017 mRNA upstream 43162 6211114 ~ 6229275 (-) False XLOC_020813
TCONS_00041009 other downstream 66918 6085307 ~ 6087757 (-) True XLOC_020808
TCONS_00041005 other downstream 108080 6044172 ~ 6046595 (-) True XLOC_020805
TCONS_00040997 other downstream 260047 5893469 ~ 5894628 (-) True XLOC_020799
TCONS_00040996 other downstream 260178 5871035 ~ 5894497 (-) False XLOC_020799
TCONS_00040993 other downstream 405225 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00041011 other upstream 2419 6170371 ~ 6176259 (-) True XLOC_020811
TCONS_00041020 other upstream 105629 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041022 other upstream 132359 6300311 ~ 6316979 (-) False XLOC_020818
TCONS_00041023 other upstream 133747 6301699 ~ 6305063 (-) False XLOC_020818
TCONS_00041024 other upstream 145821 6313773 ~ 6316961 (-) True XLOC_020818

Expression Profile

//