RNA id: TU1253246



Basic Information


Item Value
RNA id TU1253246
length 448
RNA type TUCP
GC content 0.60
exon number 1
gene id G1102115
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67225352 ~ 67225799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cccctttttctccccaatttcatagtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaaccaaccaagttcctgcttctttaacacagcgcacatccaacccggaagccagccggaggaaacaccgtgcacctggccaccttggctagcgtacactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaacccaggactctgatggcacagctggcgctgcagtacagcacccttaaccactgcgccacccgggaggcccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1253232 lncRNA upstream 28081 67197025 ~ 67197271 (+) True G1102101
TU1253228 lncRNA upstream 33607 67191406 ~ 67191745 (+) True G1102098
TU1253204 lncRNA upstream 82546 67138632 ~ 67142806 (+) True G1102074
TU1253167 lncRNA upstream 130420 67094706 ~ 67094932 (+) True G1102044
TU1253166 lncRNA upstream 132112 67092997 ~ 67093240 (+) True G1102043
TU1253248 lncRNA downstream 1948 67227747 ~ 67227946 (+) True G1102117
TU1253249 lncRNA downstream 7484 67233283 ~ 67233683 (+) True G1102118
TU1253868 lncRNA downstream 30052 67255851 ~ 67256069 (+) True G1102706
TU1253891 lncRNA downstream 44053 67269852 ~ 67270130 (+) True G1102728
TU1253932 lncRNA downstream 75170 67300969 ~ 67301177 (+) True G1102766
XM_021624660.2 mRNA upstream 61339 67148801 ~ 67164013 (+) True LOC110538084
XM_021624657.2 mRNA upstream 198214 67008013 ~ 67027138 (+) False LOC110538082
XM_021624658.2 mRNA upstream 198214 67008013 ~ 67027138 (+) True LOC110538082
XM_036938111.1 mRNA upstream 546687 66674135 ~ 66678665 (+) True LOC110538077
XM_021624643.2 mRNA upstream 554537 66661875 ~ 66670815 (+) False LOC110538072
XR_005035302.1 mRNA downstream 55164 67280963 ~ 67292113 (+) True LOC118937895
XR_002475700.2 mRNA downstream 255263 67481062 ~ 67491128 (+) True LOC110538094
XM_021625914.2 mRNA downstream 345425 67571224 ~ 67574023 (+) True LOC110538945
XM_021624686.2 mRNA downstream 411325 67637124 ~ 67643446 (+) True LOC110538098
XM_021624687.2 mRNA downstream 422154 67647953 ~ 67672094 (+) True LOC110538099
TU1253139 other upstream 165945 67058735 ~ 67059407 (+) False G1102021
TU1253140 other upstream 166036 67058735 ~ 67059316 (+) False G1102021
TU1252914 other upstream 453961 66724661 ~ 66771391 (+) False G1101805
TU1252863 other upstream 561895 66661964 ~ 66663457 (+) True LOC110538072
TU1252355 other upstream 1057155 66166431 ~ 66168197 (+) True LOC110538063
TU1254582 other downstream 579550 67805349 ~ 67810063 (+) True LOC110538103
TU1254663 other downstream 761895 67987694 ~ 68008477 (+) False G1103416
TU1255479 other downstream 1278242 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 1278242 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 1302482 68528281 ~ 68531861 (+) True G1104162

Expression Profile