RNA id: TU1254311



Basic Information


Item Value
RNA id TU1254311
length 206
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1103097
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67574131 ~ 67574336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtacagggagtgaacatttaataaacaACGGACATGAAACAACATGGGCAgcatctggacaggggaaacaaaaggacattaatgctgacacagggatcAAACTGAGGAaaagacagatatagagggggcaatcaacaaagtgaaggagtctGGGTGAGTCCACTGAAGCGCTGCTGCTCGCAATGATGGTGAttggtgtgcgtaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1254301 lncRNA upstream 9053 67564857 ~ 67565078 (+) True G1103087
TU1254288 lncRNA upstream 15161 67558725 ~ 67558970 (+) True G1103074
TU1254186 lncRNA upstream 71163 67497753 ~ 67502968 (+) True G1102984
TU1254138 lncRNA upstream 78663 67495093 ~ 67495468 (+) True G1102961
TU1254137 lncRNA upstream 81118 67492609 ~ 67493013 (+) True G1102960
TU1254313 lncRNA downstream 914 67575250 ~ 67575572 (+) True G1103099
TU1254314 lncRNA downstream 1541 67575877 ~ 67576185 (+) True G1103100
TU1254323 lncRNA downstream 7052 67581388 ~ 67581676 (+) True G1103109
TU1254336 lncRNA downstream 14588 67588924 ~ 67589154 (+) True G1103122
TU1254388 lncRNA downstream 102247 67676583 ~ 67687296 (+) True G1103172
XM_021625914.2 mRNA upstream 108 67571224 ~ 67574023 (+) True LOC110538945
XR_002475700.2 mRNA upstream 83003 67481062 ~ 67491128 (+) True LOC110538094
XR_005035302.1 mRNA upstream 282018 67280963 ~ 67292113 (+) True LOC118937895
XM_021624660.2 mRNA upstream 410118 67148801 ~ 67164013 (+) True LOC110538084
XM_021624657.2 mRNA upstream 546993 67008013 ~ 67027138 (+) False LOC110538082
XM_021624686.2 mRNA downstream 62788 67637124 ~ 67643446 (+) True LOC110538098
XM_021624687.2 mRNA downstream 73617 67647953 ~ 67672094 (+) True LOC110538099
XM_021624690.2 mRNA downstream 114648 67688984 ~ 67748718 (+) False LOC110538100
XM_021624688.2 mRNA downstream 114649 67688985 ~ 67748718 (+) False LOC110538100
XM_021624689.2 mRNA downstream 114649 67688985 ~ 67748718 (+) True LOC110538100
TU1253246 other upstream 348332 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 514724 67058735 ~ 67059407 (+) False G1102021
TU1253140 other upstream 514815 67058735 ~ 67059316 (+) False G1102021
TU1252914 other upstream 802740 66724661 ~ 66771391 (+) False G1101805
TU1252863 other upstream 910674 66661964 ~ 66663457 (+) True LOC110538072
TU1254582 other downstream 231013 67805349 ~ 67810063 (+) True LOC110538103
TU1254663 other downstream 413358 67987694 ~ 68008477 (+) False G1103416
TU1255479 other downstream 929705 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 929705 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 953945 68528281 ~ 68531861 (+) True G1104162

Expression Profile