RNA id: TU1254336



Basic Information


Item Value
RNA id TU1254336
length 231
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1103122
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67588924 ~ 67589154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttacataggtattcatcttgtccagatgggatagggcagtgtgcagtgtgatggcgattgcatcgtcagtggacctattggggaggtaagcaaattggagtgggtctagggtatcaggtagggtggaggtgatatgatccttgactagtctctcaaagcacttcatgatgagagAGGTGAGTGCAGTGGGGCGAttgtcattcagttcagttaccttagctttcttggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1254323 lncRNA upstream 7248 67581388 ~ 67581676 (+) True G1103109
TU1254314 lncRNA upstream 12739 67575877 ~ 67576185 (+) True G1103100
TU1254313 lncRNA upstream 13352 67575250 ~ 67575572 (+) True G1103099
TU1254311 lncRNA upstream 14588 67574131 ~ 67574336 (+) True G1103097
TU1254301 lncRNA upstream 23846 67564857 ~ 67565078 (+) True G1103087
TU1254388 lncRNA downstream 87429 67676583 ~ 67687296 (+) True G1103172
TU1254545 lncRNA downstream 169763 67758917 ~ 67759152 (+) True G1103312
TU1254569 lncRNA downstream 182412 67771566 ~ 67771775 (+) True G1103331
TU1254571 lncRNA downstream 184345 67773499 ~ 67773857 (+) True G1103333
TU1254572 lncRNA downstream 185197 67774351 ~ 67774559 (+) True G1103334
XM_021625914.2 mRNA upstream 14901 67571224 ~ 67574023 (+) True LOC110538945
XR_002475700.2 mRNA upstream 97796 67481062 ~ 67491128 (+) True LOC110538094
XR_005035302.1 mRNA upstream 296811 67280963 ~ 67292113 (+) True LOC118937895
XM_021624660.2 mRNA upstream 424911 67148801 ~ 67164013 (+) True LOC110538084
XM_021624658.2 mRNA upstream 561786 67008013 ~ 67027138 (+) True LOC110538082
XM_021624686.2 mRNA downstream 47970 67637124 ~ 67643446 (+) True LOC110538098
XM_021624687.2 mRNA downstream 58799 67647953 ~ 67672094 (+) True LOC110538099
XM_021624690.2 mRNA downstream 99830 67688984 ~ 67748718 (+) False LOC110538100
XM_021624688.2 mRNA downstream 99831 67688985 ~ 67748718 (+) False LOC110538100
XM_021624689.2 mRNA downstream 99831 67688985 ~ 67748718 (+) True LOC110538100
TU1253246 other upstream 363125 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 529517 67058735 ~ 67059407 (+) False G1102021
TU1253140 other upstream 529608 67058735 ~ 67059316 (+) False G1102021
TU1252914 other upstream 817533 66724661 ~ 66771391 (+) False G1101805
TU1252863 other upstream 925467 66661964 ~ 66663457 (+) True LOC110538072
TU1254582 other downstream 216195 67805349 ~ 67810063 (+) True LOC110538103
TU1254663 other downstream 398540 67987694 ~ 68008477 (+) False G1103416
TU1255479 other downstream 914887 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 914887 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 939127 68528281 ~ 68531861 (+) True G1104162

Expression Profile