RNA id: TU1255095


Basic Information

Item Value
RNA id TU1255095
length 2106
lncRNA type read_through
GC content 0.43
exon number 4
gene id G1103801
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68236836 ~ 68266542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGCCTGAGGGCAAGGAACCACAAAGAAAAAAAGAATATGAATATACATATTTCAGATAGCTGTACATACACCGTTCAGCTAGGTTAATATCTTTACAATTACTTTCTGTGTGACTCGATGTTTACACGTGCATTGTTTTGATTGAGAGCTCGGGGTCTGGAGCACATTTCAACAAATAACGTTTTTCTTTCATAATAGGGAGGCCCAAGAGCCTGTAATTCAAAATCATTTTAATAAAGTATAATCTGACTTCGTGGTGGGAGGCGATTCTAAAGTGCTCCCTGACCTTGGCTTGTCTTTCCACTGAGTTCACACAGCGTAAATTTTTCAGGACAAAAGCTGGGCATCTTTACCGCCGATCCGCGAGACATTCCGTGCTCTTTTCCATCGAACGACTCCCCAAATTAGGCAACGTCAAGGCCGGAGGACCGAGAAAGCATAAACTATAAGACATTTTAATCATAAATGCATAGTTAACTGAAACATCGAGTTATTCAATGTTAAAATATAACGTTTATACGCGTTACCCCAAAATAACAAAAACGACTAAATTTCCATAAATTGCTTTCTTAGAAGCTATTTGCAACTAGCTAGTACACTAGCCGCATTTTAGATAGCTGTGCAAACATTAGCCTGTTAGCTGGGTCAAGTCGTGAAAATACATTACTTCGGATCATATACATGCATAGTATTATTTTTATACAAGTGTAGCTAAATGTGAGACATTACTTCCCCTTAAGGGGCATTTAACCTGGCCAACTATCAAACTAATGTAATAATCTGCACCGACCTAACAAAATAGCTAGCGCGGCCGCCTAGCTAAGTAACGTTACACCCCCCCACGATGCTAAAAAAAAATACAAGGAAAACGGAAGTCGTTAACTCTACATTTTGCAAGCTCAAAGAAATTGATGCGCACACTGCATAAATGTTTGTATATTCCCTTGTTATATACACAGACCATATTATTTCAGGGGTAATTAATGCCTAAGCAAGCCAAATAACCGTGGCACGCAAAGGTTAGCTTGCTGGCTAACGTGCGCTAGCCTAGAACCAACAAAGATCTCGACAAATACACTCTGGCCCATTGatggaaaacatttttttttttttttttttTTCAAGAAATCAACGCTTTAATCAAGTAAACTAGGCGAGCCTTGCatattccacttcatgattgttttttttattgacattTGTAAGTGCCTTCAAGTCACAAGGTACATGAACAACTCCAGATCAACAGCATTCAGAATGGTTTGCGATAAGTCAGTTCCAGTTGCAATTCCATTTTATTTACTCATACAGGAATCCATGTTGGCAGCTCTTGTACTCAACCACCTCCTCTGGCTTGAACCACAGGCCGATCTCCTTTTTGGCACTATCAAGGGAGTCACTGCCGTGGATGATGTTCCTGAAGCGTGATACAGAGGTCACCGCGGATGCTGCCGGGCTTGGAGTCTGCAGGGTTGGTCTCTCCCAGCATCAGTCTACCGTTCTTCACAACATTCAGGCCTTCCCAGATCTGAACACAAGGGGAGGGTAAAATTGAGGCTTGAGTGGAACAATACATTCTATCACAATCACTGCTCAAGAGAACCTGAAGTATTGTGTTCAGGGTGGCATTAGCAGTGAGCGAGCATTTTGAAGAGGCCTGCGAGTAGTGTCTGGAGGATAGTTACCATGGCAACAACGGGACCAGAGTGCATGAAGGCGCAAAGGCCACCATAGAAGGGCATGTCCTTCAGGTCAATGTAGTGCTGCTTGACATGGTCCTCAGATGCCTGCAATCACAAAGACTCAGTTCAATGCCGTTGAACCCTACAAGACGCACCTCTGAAAAGATGCAGTTACTCACATACCTGGAGCATCTTCATGGCCACAAGCCTGAAGCCCCTCTGCTCAAAGCGCTTAATGATCTCCCCCACAAGCCCCCTCTGGACACCATCGGGCTTGATGGCAATGAAGGTACGTTCGGTGTTTGCCATGGTGCTTTTAAAGTTGAGATGAAGAGACTGACAGAAGACCCAGGAGACAACCGTTCAAGGCAGGGAAACAATCAGTAAGGACAAGAATTGATGACAGCTAGTTTATAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1255113 lncRNA upstream 14720 68220156 ~ 68222116 (+) True G1103819
TU1255085 lncRNA upstream 24835 68211709 ~ 68212001 (+) True G1103800
TU1255047 lncRNA upstream 26239 68204048 ~ 68210597 (+) True G1103762
TU1255037 lncRNA upstream 89424 68147208 ~ 68147412 (+) True G1103752
TU1254670 lncRNA upstream 188119 67987694 ~ 68048717 (+) False G1103416
TU1255212 lncRNA downstream 186800 68453342 ~ 68455172 (+) True G1103912
TU1255470 lncRNA downstream 228582 68495124 ~ 68496716 (+) True G1104142
TU1255517 lncRNA downstream 283392 68549934 ~ 68550220 (+) True G1104176
TU1255521 lncRNA downstream 290324 68556866 ~ 68557199 (+) True G1104180
TU1255534 lncRNA downstream 310805 68577347 ~ 68578669 (+) True G1104191
XM_036938149.1 mRNA upstream 33814 68151328 ~ 68203022 (+) True LOC110538117
XM_021624717.2 mRNA upstream 90039 68142537 ~ 68146797 (+) True prf1.3
XM_036938148.1 mRNA upstream 91209 68142537 ~ 68145627 (+) False prf1.3
XM_021624710.2 mRNA upstream 156667 68077590 ~ 68080169 (+) True LOC110538111
XM_036938146.1 mRNA upstream 166263 68065992 ~ 68070573 (+) True LOC110538113
XM_021624722.2 mRNA downstream 154 68266696 ~ 68273592 (+) True LOC110538121
XM_021624723.2 mRNA downstream 8364 68274906 ~ 68289864 (+) True LOC110538122
XM_021624727.2 mRNA downstream 26260 68292802 ~ 68308952 (+) False LOC110538123
XM_021624726.2 mRNA downstream 29288 68295830 ~ 68308952 (+) False LOC110538123
XM_021624725.2 mRNA downstream 29289 68295831 ~ 68308952 (+) False LOC110538123
TU1254663 other upstream 228359 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 426773 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 1011037 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 1177429 67058735 ~ 67059407 (+) False G1102021
TU1255479 other downstream 237499 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 237499 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 261739 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 1049190 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 1556673 69823215 ~ 69855195 (+) True LOC110538173

Expression Profile