RNA id: TU1255212



Basic Information


Item Value
RNA id TU1255212
length 233
lncRNA type antisense_over
GC content 0.61
exon number 2
gene id G1103912
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68453342 ~ 68455172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTCACCTCTCCTGGAAGAGTTTGGAGGGAATGAGTCCAGCACGGAGGTTGCTGTCACCCACCCGTTTGGCCTGCCACCAGGTGGGGTCGTCCTGGGTTACCACCTGCAGGATGTCACCTCGCTTGAAGGGAAGTCCCGCCTCCTGACAGGGCGTGGCCTTGTCATCAGCAGGGATGTAGTCAAACAGGGCCCTCATGTAGACCTGAGagacccccccCTTGCTCTCCTTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1255095 lncRNA upstream 186800 68236836 ~ 68266542 (+) False G1103801
TU1255087 lncRNA upstream 186800 68257573 ~ 68266542 (+) True G1103801
TU1255113 lncRNA upstream 231226 68220156 ~ 68222116 (+) True G1103819
TU1255085 lncRNA upstream 241341 68211709 ~ 68212001 (+) True G1103800
TU1255047 lncRNA upstream 242745 68204048 ~ 68210597 (+) True G1103762
TU1255470 lncRNA downstream 39952 68495124 ~ 68496716 (+) True G1104142
TU1255517 lncRNA downstream 94762 68549934 ~ 68550220 (+) True G1104176
TU1255521 lncRNA downstream 101694 68556866 ~ 68557199 (+) True G1104180
TU1255534 lncRNA downstream 122175 68577347 ~ 68578669 (+) True G1104191
TU1255702 lncRNA downstream 192176 68647348 ~ 68647635 (+) True G1104340
XM_036938167.1 mRNA upstream 15750 68398669 ~ 68437592 (+) True LOC110538949
XM_021624732.2 mRNA upstream 58775 68377001 ~ 68394567 (+) False LOC110538126
XM_021624733.2 mRNA upstream 58775 68377004 ~ 68394567 (+) False LOC110538126
XM_021624734.2 mRNA upstream 58775 68377004 ~ 68394567 (+) False LOC110538126
XM_021624735.2 mRNA upstream 58775 68377014 ~ 68394567 (+) True LOC110538126
trnaa-ugc-55 mRNA downstream 67260 68522432 ~ 68522508 (+) True trnaa-ugc-55
XM_021624744.2 mRNA downstream 103728 68558900 ~ 68594615 (+) True LOC110538131
trnac-gca-3 mRNA downstream 315929 68771101 ~ 68771172 (+) True trnac-gca-3
XM_021624750.2 mRNA downstream 333188 68788360 ~ 68794618 (+) False LOC110538134
XM_021624753.2 mRNA downstream 333188 68788360 ~ 68794618 (+) False LOC110538134
TU1254663 other upstream 444865 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 643279 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 1227543 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 1393935 67058735 ~ 67059407 (+) False G1102021
TU1255479 other downstream 48869 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 48869 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 73109 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 860560 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 1368043 69823215 ~ 69855195 (+) True LOC110538173

Expression Profile