RNA id: TU1255470


Basic Information

Item Value
RNA id TU1255470
length 1473
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1104142
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68495124 ~ 68496716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttaaatgtatttattttcatcGCACTTACATTCTCTGCAGTAAGACATTTAATTTACAAAAGTTGTATGTACATTTAGAAAATAGTGCACTGTCTCCATGACACACAtactcacaaatacacacagacacatgaacGACTTCCAGATACATCATATTTTTGCGGAAACTGTATAGACATCGTAATTGGCACATCCGAGAACAAGCTTTGTCGAGAGCTTTCTTTTGCATAATTTTCCTAATTCTTCAAAAAGACCAATCGAAACAGGCACGTTTGCAGATGCAGACAGCTTCAGCAGGGAAGGTATTAATAACaaaaaatgtaggcctacttcGCTCCAGGCCAGActaatagactgtagagtagGTCTATCAGCTCCAGACAAGACTCAAACAAAATATCCCTTTACTGTATAAACCCCTGAACTAGGGATCCAGCTCCTTCAGCCATTCATTCACACAGCTCTCCTCATGAAAACACATTCAATCCTAAAGTATAAAATACTCAAATAAAATTGCTCTCGCTGAGAATGTGTCTATGATTCCCCCCACTCAAAAGTGATTCACATGTAGTGAAACGCAATACACAGTTCAGTGCAATTAGCAAGGGATGAATCACTTTCAAATACTACGCTGAGAATGTGTCTATGATTCCCCCCACTCAAAAGTGATTCACATGTAGTGAAACGCAATACACAGTTCAGTGCAATTAGCAAGGGATGAATCACTTTCAAATACTACGCTGAGAATGTGTCTATGATTCCCCCCACTCAAACGAATCACATGTAGTGAAACGCAATACATAATTCAGTGCAATTAGCAAGGGATGAATCACTTTCAAATACTACGGTGATTATGAGAGCGCAGACACTACAATGCAGAATAACCCATCATCAATAAAATCTATCAGTAATCTCTTCAATAAGACATAGACATACAGGTAATTTAACTAACtgtaaccgatcgctgcagctgtgcatagtccatctgtaaatagcccacccaatctacctacctcatccccatactgtttttaatgtatttttctgttcttttgcacaccagtatctctacttgcacatcatcatctgttcATTTATCACCttagtgttaatctgctaaattgtaattattcactcctagggcctatttattgcctacctccttttgcacacacttcatatagactttcttttttttctactgtgtcattgacttgtttattgtgttattggcttgtttattgtttattccatgtgtaactctgtgtcgttgtctgtgtcacactgctttgctttatcttggccaggtcgcagttgtaaatgagaacgtgttctcaactagcctacctggttaaataaaggtgaaataaaaaataaaaaataaataaaaaggacccgcatactgtagagagaaaaaacatgaaaaGCTTGTCCCTGAACAATGGCCACACCTACTGGCTATGACAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1255212 lncRNA upstream 39952 68453342 ~ 68455172 (+) True G1103912
TU1255095 lncRNA upstream 228582 68236836 ~ 68266542 (+) False G1103801
TU1255087 lncRNA upstream 228582 68257573 ~ 68266542 (+) True G1103801
TU1255113 lncRNA upstream 273008 68220156 ~ 68222116 (+) True G1103819
TU1255085 lncRNA upstream 283123 68211709 ~ 68212001 (+) True G1103800
TU1255517 lncRNA downstream 53218 68549934 ~ 68550220 (+) True G1104176
TU1255521 lncRNA downstream 60150 68556866 ~ 68557199 (+) True G1104180
TU1255534 lncRNA downstream 80631 68577347 ~ 68578669 (+) True G1104191
TU1255702 lncRNA downstream 150632 68647348 ~ 68647635 (+) True G1104340
TU1255705 lncRNA downstream 152453 68649169 ~ 68649380 (+) True G1104343
XM_036938167.1 mRNA upstream 57532 68398669 ~ 68437592 (+) True LOC110538949
XM_021624732.2 mRNA upstream 100557 68377001 ~ 68394567 (+) False LOC110538126
trnaa-ugc-55 mRNA downstream 25716 68522432 ~ 68522508 (+) True trnaa-ugc-55
XM_021624744.2 mRNA downstream 62184 68558900 ~ 68594615 (+) True LOC110538131
trnac-gca-3 mRNA downstream 274385 68771101 ~ 68771172 (+) True trnac-gca-3
XM_021624750.2 mRNA downstream 291644 68788360 ~ 68794618 (+) False LOC110538134
XM_021624753.2 mRNA downstream 291644 68788360 ~ 68794618 (+) False LOC110538134
TU1254663 other upstream 486647 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 685061 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 1269325 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 1435717 67058735 ~ 67059407 (+) False G1102021
TU1255479 other downstream 7325 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 7325 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 31565 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 819016 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 1326499 69823215 ~ 69855195 (+) True LOC110538173

Expression Profile