RNA id: TCONS_00041024


Basic Information

Item Value
RNA id TCONS_00041024
length 1441
RNA type processed_transcript
GC content 0.33
exon number 4
gene id XLOC_020818
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6300311 ~ 6316979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

accggctgcagctgagcttcatgtcgaacgcaccttttgatacatgcttcgaagcctcggcgcacaacgtcacatcactagtgGAAGCGTCGTTAAAATGATACACGTCTTTAATTTGCTATCATGGCTCTTGATTCTACGCGTCCTTGgagtgaCAAAATTACCCCTACAACAGAAGAAAAGAGCCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGAATCGTCCTCCACTCACTCTACCACTTTGTTTTTCCTTGCCAGACTTCATTCAAGAAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCCAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTCGATATTACTttgacatatgttttacacagccttccagctgcaacccagcactgtgaaacacccatacactctcgtatTCACAGACACTTCTACACTATgttcaaattcacctatagcacaagtgtttggactgtggtggaaacccacaccaaaacagggagaacatgcaaactccacacagaaacgccagcagacccagccgggactcataccagcaacctttttgctgtgaggtgacagtctgAGCCACTGGGTTGCCCCAGTGTAGTTATTAATAACCTCCAGATGTTTTACAGTttgattttgtaataataatgcacgtttacatttattgtaatatgtattttaaaatttattcacaatgtaatttatttttatgttatttataataacGTTAAATGTCATAAGAaagttataatttaatataatattataataaataattataataatgttaaaatataaataatacaaatttatttataatgtttttaatagtttatttttataaagagaAGTCTCAAAGTTTGTCTTTATTATAGAAAACTCATTGTTGAATGGCtaccactttacaataaggttgtatgtattagttaatgtatttactaacataataaacaatacatttattacagtattcattcatcTTTGCTAATGTTGGTAAATGGTAAaagttgttaattgtttattcatgttaactcgcaatgtattaactaatgttaacaagcataactgattttattaatgcattagtaaatgctgcaCATAAATTATGCTGTACAGGTATTGTTCATATTAGTTCATATTTAAACCATTAACATTACttataaaactactgtaaaatgtaactgttgtatgtatgttgttatattatatttgtatgtattttatatgtatttatttattttgttatatttgttaacGTATGTgattttgaaacatttcattaCAATCtaagtgtttaatgtatgttcgttatgcagtattataaataaatgttataatgatTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148832

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042321 lncRNA downstream 67034 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042320 lncRNA downstream 145821 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042319 lncRNA downstream 247517 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042318 lncRNA downstream 303951 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00040999 lncRNA downstream 395074 5909525 ~ 5918699 (-) True XLOC_020800
TCONS_00042322 lncRNA upstream 80452 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00041039 lncRNA upstream 210453 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00041938 lncRNA upstream 246685 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00042323 lncRNA upstream 379556 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00042324 lncRNA upstream 410579 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00041021 mRNA downstream 26285 6284038 ~ 6287488 (-) True XLOC_020817
TCONS_00041019 mRNA downstream 76380 6232552 ~ 6237393 (-) True XLOC_020814
TCONS_00041017 mRNA downstream 84498 6211114 ~ 6229275 (-) False XLOC_020813
TCONS_00041025 mRNA upstream 25820 6342781 ~ 6361178 (-) False XLOC_020819
TCONS_00041026 mRNA upstream 25820 6342781 ~ 6362442 (-) False XLOC_020819
TCONS_00041027 mRNA upstream 25820 6342781 ~ 6362472 (-) True XLOC_020819
TCONS_00041028 mRNA upstream 76266 6393227 ~ 6404906 (-) False XLOC_020820
TCONS_00041029 mRNA upstream 76681 6393642 ~ 6404807 (-) False XLOC_020820
TCONS_00041023 other downstream 8710 6301699 ~ 6305063 (-) False XLOC_020818
TCONS_00041020 other downstream 31584 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041011 other downstream 137514 6170371 ~ 6176259 (-) True XLOC_020811
TCONS_00041009 other downstream 226016 6085307 ~ 6087757 (-) True XLOC_020808
TCONS_00041005 other downstream 267178 6044172 ~ 6046595 (-) True XLOC_020805
TCONS_00041030 other upstream 84618 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041035 other upstream 159181 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041038 other upstream 198436 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041041 other upstream 270589 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041043 other upstream 344751 6661712 ~ 6662906 (-) True XLOC_020833

Expression Profile

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