RNA id: TCONS_00042322


Basic Information

Item Value
RNA id TCONS_00042322
length 2305
lncRNA type read_through
GC content 0.35
exon number 1
gene id XLOC_020821
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6397413 ~ 6399717 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCTTTTCCTTAAACGTTCAACAGTTCATTATACTTTAACCTAAAAATAAATGTTGAGTTGGAGATAAAATCTCCAATGTGCCTTACAAATTTATGCAAGAAATGCTCATGGATGCATTTGGGACACATCATCAGTAATGTATCCTGGGATCATTGGGTGTTTCGGGTCTCTCAACATCACACACTGTCACCCAGCCGGGGTTGATCAAGTCCTGACTTGTGTCCCAGCAGCAGTCCACGGATCCACCCACTTAATCCACATCCACCTTGTGGCCTTCTCGGCGGCTTCGCTTGCGGATCGGATGGCCATTGCGTTTGTCCCTAAGCAACTGTTTTGTGAAGCCGAAGGGATTAGTGATGAAGGCCGCTCACTTCCTGGCTCTCTCTCGCCCCTGTCTCAGATATGCCACTCTGCCCTGTGTAGGATGATCAGCTTCTTTCTCAAAATGTTTTTCAACTCCGCTAATAGTTGCTTCTCCTCATCAGTAGCTTTCTTATACAGTTTCTTGAGGAAGAGAAGCTCCTGACGCAGATGATGTATCTGGGTAGCTCTATGGGTCGTAGTGTAGGAAGTAATGGTACACAGCAAATTTCTGGAGTTGAAAAATTAGGAGTTAGGCAAAAAAGTGTGAAAGAGTTaatttttttgagtttatttttaaactttaacacaATTTTGTGTTATGGATTACCCCTTGCTGTATTGTATTCTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTTGATAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCGTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTttctaaatgtatatataaaagtgTGTTTTGCTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGTGGctgttttgtgcagttttttaaaaaatgttgtggaTGTGAACAAGCTATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttatttcaggCCACGATGCTGATAAAAGTGCAATTTGTAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGCGTaacagagtatttttttttttttattataataataataataataataataataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGGTAGgttatttaagaacatttttatagattttgAAAGTTGGTCTCATGACTCAGAGTGAAAGTGTGCATTTCAGAACCATTTGCTGAcacgtgttgttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTCTGACAGATACATTGTCTTTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTgtccaaaaaatgtaatttttttttaaacttccatATACATAGATATTATACcgtaaacattacaaaataacgttacaaaatgaatgcattttaaagtaaaaaaatagtataaacacagttattagattaagttttttttgttaaaaaaatattaattttggtTATCtttctaaatacttttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTAAGGAGtatgacaagatatttttttgcTGCTTCTGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGCCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042321 lncRNA downstream 150674 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042320 lncRNA downstream 229461 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042319 lncRNA downstream 331157 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042318 lncRNA downstream 387591 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00040999 lncRNA downstream 478714 5909525 ~ 5918699 (-) True XLOC_020800
TCONS_00041039 lncRNA upstream 127697 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00041938 lncRNA upstream 163929 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00042323 lncRNA upstream 296800 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00042324 lncRNA upstream 327823 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00041046 lncRNA upstream 409649 6809366 ~ 6813803 (-) False XLOC_020838
TCONS_00041027 mRNA downstream 34941 6342781 ~ 6362472 (-) True XLOC_020819
TCONS_00041026 mRNA downstream 34971 6342781 ~ 6362442 (-) False XLOC_020819
TCONS_00041025 mRNA downstream 36235 6342781 ~ 6361178 (-) False XLOC_020819
TCONS_00041021 mRNA downstream 109925 6284038 ~ 6287488 (-) True XLOC_020817
TCONS_00041019 mRNA downstream 160020 6232552 ~ 6237393 (-) True XLOC_020814
TCONS_00041031 mRNA upstream 7728 6407445 ~ 6420239 (-) True XLOC_020822
TCONS_00041032 mRNA upstream 34955 6434672 ~ 6445861 (-) False XLOC_020823
TCONS_00041033 mRNA upstream 42509 6442226 ~ 6444807 (-) True XLOC_020823
TCONS_00041034 mRNA upstream 56286 6456003 ~ 6465060 (-) True XLOC_020824
TCONS_00041036 mRNA upstream 87331 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041022 other downstream 80434 6300311 ~ 6316979 (-) False XLOC_020818
TCONS_00041024 other downstream 80452 6313773 ~ 6316961 (-) True XLOC_020818
TCONS_00041023 other downstream 92350 6301699 ~ 6305063 (-) False XLOC_020818
TCONS_00041020 other downstream 115224 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041011 other downstream 221154 6170371 ~ 6176259 (-) True XLOC_020811
TCONS_00041030 other upstream 1862 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041035 other upstream 76425 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041038 other upstream 115680 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041041 other upstream 187833 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041043 other upstream 261995 6661712 ~ 6662906 (-) True XLOC_020833

Expression Profile

//