RNA id: TU1256190


Basic Information

Item Value
RNA id TU1256190
length 331
lncRNA type intronic
GC content 0.36
exon number 1
gene id G1104770
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69297239 ~ 69297569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctaataCAAATACATTAAAAATGGACACTATTCATACTCTGATGAAACACTGTCCTTATAAAACAAATATTCATGAAAAAAGTGTATACACTCTATAAAGTAATCTTGAACTTAGTCTTCTCCAGACCGAAAGCAGGTGGATGTTCTATTTAAAAACTCTCCACCCGTCATGCATGAATGAAGATTTGGTATTGAAGGGTTTCTGTAACTGGTATATTGCCACTTATTGGTGTTCCATATCCCCATCTAGTGGTCTCTCTAGCACCCCTACTCTATTACAATCCTGTGTTACATATTCTGAACAAATGTTCACATGGTATGTGTAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256188 lncRNA upstream 7007 69288974 ~ 69290232 (+) True G1104768
TU1256187 lncRNA upstream 10355 69286539 ~ 69286884 (+) True G1104767
TU1256177 lncRNA upstream 39193 69257809 ~ 69258046 (+) True G1104757
TU1256176 lncRNA upstream 39478 69257507 ~ 69257761 (+) True G1104756
TU1256171 lncRNA upstream 52011 69244993 ~ 69245228 (+) True G1104751
TU1256149 lncRNA downstream 12934 69310503 ~ 69314364 (+) True G1104732
TU1256199 lncRNA downstream 17190 69314759 ~ 69315064 (+) True G1104775
TU1256200 lncRNA downstream 17524 69315093 ~ 69315293 (+) True G1104776
TU1256152 lncRNA downstream 24093 69321662 ~ 69334729 (+) True G1104733
TU1256209 lncRNA downstream 54472 69352041 ~ 69437540 (+) False G1104781
LOC110538150 mRNA upstream 68039 69197666 ~ 69229200 (+) True LOC110538150
XR_002475702.2 mRNA upstream 121270 69171519 ~ 69175969 (+) False LOC110538148
XR_005035121.1 mRNA upstream 121270 69173773 ~ 69175969 (+) False LOC110538148
XM_021624778.2 mRNA upstream 128351 69166428 ~ 69168888 (+) True LOC110538147
trnac-gca-6 mRNA upstream 188096 69109072 ~ 69109143 (+) True trnac-gca-6
XM_036938216.1 mRNA downstream 17882 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA downstream 17882 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA downstream 17885 69315454 ~ 69321518 (+) False LOC110538155
XM_036938219.1 mRNA downstream 105424 69402993 ~ 69435277 (+) True LOC110538157
XM_021624797.2 mRNA downstream 313230 69610799 ~ 69612255 (+) True LOC110538162
TU1255496 other upstream 765378 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 791944 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 791944 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1288762 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 1487176 67805349 ~ 67810063 (+) True LOC110538103
TU1256153 other downstream 18163 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 525646 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 725139 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 725139 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 865120 70162689 ~ 70194672 (+) True G1105281

Expression Profile