RNA id: TU1256199


Basic Information

Item Value
RNA id TU1256199
length 306
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1104775
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69314759 ~ 69315064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGGTAGCCATtgtcgccatgacatcgcctacaagtgtcatcggggatttctattggagaagcatcTCTTTGGCGAGAATAATGTCTAGGCAGATGTTTGACTGTTTCTTCTTAATTTTTCAACTTTTGAGAGGTTAGTGAGACATATTGTGAAAATAAAGTTGAACTTACTGTTGAACTTACTTCAGTGGctggcttcacacacacacacacacacacacacacacacacacacacacacacacaagatttggcatgggtccccagatcctcaaaaagttctacagctgcaccactgagagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256149 lncRNA upstream 395 69310503 ~ 69314364 (+) True G1104732
TU1256190 lncRNA upstream 17190 69297239 ~ 69297569 (+) True G1104770
TU1256188 lncRNA upstream 24527 69288974 ~ 69290232 (+) True G1104768
TU1256187 lncRNA upstream 27875 69286539 ~ 69286884 (+) True G1104767
TU1256177 lncRNA upstream 56713 69257809 ~ 69258046 (+) True G1104757
TU1256200 lncRNA downstream 29 69315093 ~ 69315293 (+) True G1104776
TU1256152 lncRNA downstream 6598 69321662 ~ 69334729 (+) True G1104733
TU1256209 lncRNA downstream 36977 69352041 ~ 69437540 (+) False G1104781
TU1256211 lncRNA downstream 36977 69352041 ~ 69437721 (+) True G1104781
TU1256256 lncRNA downstream 90074 69405138 ~ 69405394 (+) True G1104821
LOC110538150 mRNA upstream 85559 69197666 ~ 69229200 (+) True LOC110538150
XR_002475702.2 mRNA upstream 138790 69171519 ~ 69175969 (+) False LOC110538148
XR_005035121.1 mRNA upstream 138790 69173773 ~ 69175969 (+) False LOC110538148
XM_021624778.2 mRNA upstream 145871 69166428 ~ 69168888 (+) True LOC110538147
trnac-gca-6 mRNA upstream 205616 69109072 ~ 69109143 (+) True trnac-gca-6
XM_036938216.1 mRNA downstream 387 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA downstream 387 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA downstream 390 69315454 ~ 69321518 (+) False LOC110538155
XM_036938219.1 mRNA downstream 87929 69402993 ~ 69435277 (+) True LOC110538157
XM_021624797.2 mRNA downstream 295735 69610799 ~ 69612255 (+) True LOC110538162
TU1255496 other upstream 782898 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 809464 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 809464 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1306282 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 1504696 67805349 ~ 67810063 (+) True LOC110538103
TU1256153 other downstream 668 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 508151 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 707644 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 707644 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 847625 70162689 ~ 70194672 (+) True G1105281

Expression Profile