RNA id: TU1256200


Basic Information

Item Value
RNA id TU1256200
length 201
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1104776
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69315093 ~ 69315293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatggcaactgcttggcatctgaccataaggtgctacagagggtagtgcgtacagcccggtacaacactggggccaagcttcctgacatccaggacctacatactaggtggtgtcagaggaaggcccaaaaaatggtcatTACTTTagtcaccctagtcatggactgttctttctgctaccgcacggcaagtggtaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256199 lncRNA upstream 29 69314759 ~ 69315064 (+) True G1104775
TU1256149 lncRNA upstream 729 69310503 ~ 69314364 (+) True G1104732
TU1256190 lncRNA upstream 17524 69297239 ~ 69297569 (+) True G1104770
TU1256188 lncRNA upstream 24861 69288974 ~ 69290232 (+) True G1104768
TU1256187 lncRNA upstream 28209 69286539 ~ 69286884 (+) True G1104767
TU1256152 lncRNA downstream 6369 69321662 ~ 69334729 (+) True G1104733
TU1256209 lncRNA downstream 36748 69352041 ~ 69437540 (+) False G1104781
TU1256211 lncRNA downstream 36748 69352041 ~ 69437721 (+) True G1104781
TU1256256 lncRNA downstream 89845 69405138 ~ 69405394 (+) True G1104821
TU1256265 lncRNA downstream 95949 69411242 ~ 69452170 (+) True G1104828
LOC110538150 mRNA upstream 85893 69197666 ~ 69229200 (+) True LOC110538150
XR_002475702.2 mRNA upstream 139124 69171519 ~ 69175969 (+) False LOC110538148
XR_005035121.1 mRNA upstream 139124 69173773 ~ 69175969 (+) False LOC110538148
XM_021624778.2 mRNA upstream 146205 69166428 ~ 69168888 (+) True LOC110538147
trnac-gca-6 mRNA upstream 205950 69109072 ~ 69109143 (+) True trnac-gca-6
XM_036938216.1 mRNA downstream 158 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA downstream 158 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA downstream 161 69315454 ~ 69321518 (+) False LOC110538155
XM_036938219.1 mRNA downstream 87700 69402993 ~ 69435277 (+) True LOC110538157
XM_021624797.2 mRNA downstream 295506 69610799 ~ 69612255 (+) True LOC110538162
TU1255496 other upstream 783232 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 809798 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 809798 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1306616 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 1505030 67805349 ~ 67810063 (+) True LOC110538103
TU1256153 other downstream 439 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 507922 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 707415 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 707415 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 847396 70162689 ~ 70194672 (+) True G1105281

Expression Profile