RNA id: TU1256152


Basic Information

Item Value
RNA id TU1256152
length 3121
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1104733
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69321662 ~ 69334729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctttccgtTATGCTTTTTTATTAGTCGTGGAAAACATGTAAGGCATATGGTAACATTACACATTGAAGCGTTACAAGCTCTAGAGTCCATACTGTGGACAGCATGGCACCCACGTACGCAGTGAAACCCAGACAAGCACAGAAGCAGCATCAATTCAAaagggtttaaaaaaaacaaagtgGAGACAACTTAGTAGACGAGTGGAAAACGACACtgtggacagaaggagagacggAATGACAAAATCAACGTGTAGGTCGAATAGCTGTCTCACAGTAAACCGTGTGTGGAATCTGAGCTGTCTGGACGGGAAAGTGACAATGGACCTGTTTTTCATGAAACTTTCCCGTAGACGGGTTCAATGTGCATCTTGTTATGAGGCTGACTTGACAGTGCCAgatgagggaagaggagggggtatGTGTGCAGTGAGGAGAGGCGAGGGGGGGCAGGAGCGGGTATAGGTGCAGTGATTTGGCTGCTGTTGGCaccatgatgatgatgagggtggaaagggaaagggactCCCTCTGCACAGAGACACTACTGAACAATACAGTGGAAGGAATAGTGAACTATACACACATGCCTTTTTTTCCGGGTCACCTACACACAGATCCTAGTGTACTATACACATCGTAACAAGCCAAATGCACCAGACACTCACAGCATTTCTATAGAGTTGTGGAATGTGTTGGTAGTTGGCACATGGCAACAATTTTTAGTGATTGCTAATGAAGAGCCAGAGACAGCCAGAAGCGGTTGGGTTGTTTTCTTTTAGGGGAGGGGTGGACGGGTGGGGGCTGTACGCCTCTGGATGTGGTAATAATCTCCAGACTGGGATTATCTTTCTAACTAGGAATACACTCCACCCAGCACTGCGATTGACATAAGACTGGGAAAGAGAacgatatagtgtgtgtgtgtgagagagaaaaacaaagacAGACAAATGTACTCAAAGGCAGTCATTTCTGATCAAGAGTACAGGAGGCTGTTTGGAATGACCTGTGAGAAACCATGTGAAACAGTGATATTACTGCTGCCAATCAAATGAAACCCTTTTTTTTACTCCCAAGAAACAATCAGCATGTTATCTAGAACAATATAGCTGGGCGCTGTGATGTTTTCCAATGCATGAAATGCCTTAGTTTCTCGAAGGATCATCTCTGGTTTTAGAGCTCTTGCATAAGAATGTGTGTCTGGCTGGAAAAGCAATTCAAGCTGACATACAACGTAGATTCACCAAGCTGGAAAAGCAATCGGGCGCTAGGGGTTGGGAGGAGTGGGTTAGGGCTCAGGCACAGCCAACATCAgattcatcctctcctctctgactcccaGTTACACCCCACGCCCTAGCCACTCactacacccacccacccacccacccgtgTGCTGCAGCTGAGTTCATCTAAGAGACCTTTTGGTTCTATCAAACAGGAAGAAAAACATTGAATCAAATGACATAATCTCTGCACCACATGCCATTGGATGCATGCAATTTAATTCCAGATGttaatgtgatgtgtgtgtatggtATGATGAGTGTGTgcatggagaggggagagggcggTGCTTTGGCTAACTGATAATTGACTAGAACCAAAGAGCTCTCGAGGTGCAATAGAGAATAATGGAATGTCTGAGACCAACAGGCTGTATGTGAACTGGGATCGGCTTTAGGACAGATATGTTGCATCTGGGACAGACCTAGAGCTGGGTTTCTATCTGTGCAGCTGTGCCATATGGCCTCGCTATGACATCCCCTACACATCTgctaactcactctctctcatcccatacaAACCATTTGGAATCAGGCTAAGAGAAACAGGAAACCGGAGTATGGTGGTGTTCACAAAGCTAAACTAGAGAGAGGTGGATGAAAGAAATGCTCCATGATTCAATGATTCGCCTGGTcatgtatattttttaaagaatccgttttaaaaaaaatatttttattttttggggtTGCAATTCTAAGAAGATTTGAGTTTGTTTGCTTTGCTGTGCAGCCTAATCGTCCATGCACCTTGTCCATTCACTGTTATGGAGATTATATGGAATGAATGTAAACGCATAGGCCTGTCGACTGATGTGGGATCAGTTTGTTGTAGTAGATGTCTGAGGCCTGATAATACTCTTAACACATTTCGCTGATCTGAGACTAGCACAATGAGGAATTTGGATATGGAGGGAAGTGCCTCTCAACGAGAtattgtgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaggattGAGGCATGAGAGCAAGACCCCAACCAATCAGAAACAACTAGAACCTTTTGTAAACTGTAGCAAAACTCTATCAGCACCCATAAGCATTTGGGACAGAAATCATACAcagattgtttttgtttttctacaAGGTCATAGGAAAAGTACCCAGAaacattttttcttcttctccttttcATTGAATGCACCGTTGTAGTCAAGGCATTGGCAGAGGAGTACATACAGTTTGGCACAAATGGTCAGGCCCAACAGAAAGGCTCATCACATTGAAAAGGAATGTAGTTAGGAAGGTCCCTGCGTAAAgagtatgaactttgaactttaAACCCcttggaaaacaaaacaaaaaaacattaagtcaaacaacaacaaaaaaaagatacCTATTAAGTAAAACATCCTTTTACTGAAGCATTAGCTTCTCACATGGCATTCAGAAAACAAAAGCACCGGTCCACGGGTTCACAGAAGGAGCCCAGCAGATCAGAAAATAACACTAACCAGAGCCTGACAGAACACAGTCACTcccccccccccacacacacacacacacatacacccacctgTTCGAGATGATAGGTGGAGTCGATGCGTGGTTTGATCTTGCCCTGTTTATAGAGGTCCAGGATGGTGGTCATGGCCTGCTGAATCACCTCCACCTCTCCGTCCAGGTAGCCCAGGTGGAAGCCACACACTGACTTGTTGTTCTGGATAAGGCTGAGTGTGTGGATGGAGAACTGGTGGTACCAGGTCTTAGCCACCGCCAGAAGGTTCTTCTTCTGGCCTGCTAGCATGTTAGCTGCACCTGCAAGGGGAGAGAGCGTAAAGGGTTAAAGGGTGTTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256200 lncRNA upstream 6369 69315093 ~ 69315293 (+) True G1104776
TU1256199 lncRNA upstream 6598 69314759 ~ 69315064 (+) True G1104775
TU1256149 lncRNA upstream 7298 69310503 ~ 69314364 (+) True G1104732
TU1256190 lncRNA upstream 24093 69297239 ~ 69297569 (+) True G1104770
TU1256188 lncRNA upstream 31430 69288974 ~ 69290232 (+) True G1104768
TU1256209 lncRNA downstream 17312 69352041 ~ 69437540 (+) False G1104781
TU1256211 lncRNA downstream 17312 69352041 ~ 69437721 (+) True G1104781
TU1256256 lncRNA downstream 70409 69405138 ~ 69405394 (+) True G1104821
TU1256265 lncRNA downstream 76513 69411242 ~ 69452170 (+) True G1104828
TU1256320 lncRNA downstream 124618 69459347 ~ 69459604 (+) True G1104877
XM_036938216.1 mRNA upstream 144 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA upstream 144 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA upstream 144 69315454 ~ 69321518 (+) False LOC110538155
LOC110538150 mRNA upstream 92462 69197666 ~ 69229200 (+) True LOC110538150
XR_002475702.2 mRNA upstream 145693 69171519 ~ 69175969 (+) False LOC110538148
XM_036938219.1 mRNA downstream 68264 69402993 ~ 69435277 (+) True LOC110538157
XM_021624797.2 mRNA downstream 276070 69610799 ~ 69612255 (+) True LOC110538162
XM_021557684.2 mRNA downstream 395528 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA downstream 395802 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA downstream 397170 69731899 ~ 69735305 (+) True LOC110486238
TU1256153 other upstream 4014 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 789801 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 816367 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 816367 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1313185 67987694 ~ 68008477 (+) False G1103416
TU1256295 other downstream 488486 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 687979 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 687979 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 827960 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 990229 70324958 ~ 70327126 (+) True G1105357

Expression Profile