RNA id: TU1256211


Basic Information

Item Value
RNA id TU1256211
length 1513
lncRNA type read_through
GC content 0.38
exon number 2
gene id G1104781
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69352041 ~ 69437721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagaacatatgaaagctggtggttcctttaacatgagtcttcaatattcccaggtaagaagttttaggttgtagttattatagttattataggaattataggactatttccctctataccatttgtatttcattaacctttgactattggatgttcttataggcactttagtactgccagtgtaacagtatagcttccgtccctctagttagcacacgctaactagctagccatttcacttcggttacaccagcctcgtctcgggagttgataggcttgaagtcataaacagcgcaatgcttgacgcacaacgcacaaaagtgctgtttgcaAAACAGTGCTGtttgctggcaaaacgcacgaaagtgctgtttgaatgaatgtttacatgcctgcttctgcctaccaccactcagtcagatacttgtatgcttgtgtgctcagtcagattatatgcaacgcaggacacgctagataatatctagtaatatcatattttaataagataagtttaatgctagctagcaacttaccttggcttactgcattcgcgtaacaggcaatctccttgtggagtgcaatgagagagaggcaggtcgttattgcattggactagttaactaaggttgcaaaattgaatcccccgagctgacaaggtgaaaatctgtcgttctgcccctgaacaaggcagttaacccaccgttcctaggccgtcattgaaaataagaatgtgttcttaactgacttgcctagttaaataaaggtaaaacatttttaaattaaaatatctgcaaatcggcgcccaaaaatacagatttccgattgttatgaaaacttgaaatcggccctaattaatcggccattccgattaatcggtcgacctctagttgataCTTCCTGTTGCCATATATGAGAATAGAAacgtgtaaaaaaacaaaatgctGAAAAGGGACTCTTATTGAGTGGGTAAATGATGGGAgtaggtcagacagacagaaatacagtagTCAGTTTGACATTGCTTTtgtaacaacacagagttaacaACATGAAGAATGTGTGGAGTTTTCCTCAGATCATTCGAACCACCAAGTGCTTTCTAGAAAAAAGTCACTTTACATATCTGTTTTCGTAATAATTTAACACTATTCAATGCGTCAACTCAGATCATGTCAACTTGATTCACTGAAGCTATTGCTGTTGTCGTTATGTTAAGATGTTACTTTGTGGGAAATATAGCGGTAAAATGTTAGGGCTATTTTACTGTATTTTCACATACTCTAAAAGTCTCAAATAAAGCAACAGCTTGACTGTAGGGAGAAGAGACATCCTCTCTGACCCATGTCTCTTCATTGTGTTTGAGAAGACATCAGTGCTGTCAGTCACTAACATTACATACAGTGCTGCTTAAAAGTATGTCAACCCCTTGTGCAAATACAGATTTTTTATGTTTTTACCATGAAATCTTTATTTAATCAGAACCAGTCTTTTTGATCTGACATATGTTGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256152 lncRNA upstream 17312 69321662 ~ 69334729 (+) True G1104733
TU1256200 lncRNA upstream 36748 69315093 ~ 69315293 (+) True G1104776
TU1256199 lncRNA upstream 36977 69314759 ~ 69315064 (+) True G1104775
TU1256149 lncRNA upstream 37677 69310503 ~ 69314364 (+) True G1104732
TU1256190 lncRNA upstream 54472 69297239 ~ 69297569 (+) True G1104770
TU1256320 lncRNA downstream 21626 69459347 ~ 69459604 (+) True G1104877
TU1256328 lncRNA downstream 32002 69469723 ~ 69469943 (+) True G1104885
TU1256336 lncRNA downstream 39165 69476886 ~ 69477085 (+) True G1104893
TU1256341 lncRNA downstream 50056 69487777 ~ 69488061 (+) True G1104898
TU1256350 lncRNA downstream 58628 69496349 ~ 69496558 (+) True G1104907
XM_036938216.1 mRNA upstream 30523 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA upstream 30523 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA upstream 30523 69315454 ~ 69321518 (+) False LOC110538155
LOC110538150 mRNA upstream 122841 69197666 ~ 69229200 (+) True LOC110538150
XR_005035121.1 mRNA upstream 176072 69173773 ~ 69175969 (+) False LOC110538148
XM_021624797.2 mRNA downstream 173078 69610799 ~ 69612255 (+) True LOC110538162
XM_021557684.2 mRNA downstream 292536 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA downstream 292810 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA downstream 294178 69731899 ~ 69735305 (+) True LOC110486238
XM_021624807.2 mRNA downstream 361953 69799674 ~ 69819817 (+) False LOC110538170
TU1256153 other upstream 34393 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 820180 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 846746 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 846746 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1343564 67987694 ~ 68008477 (+) False G1103416
TU1256295 other downstream 385494 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 584987 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 584987 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 724968 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 887237 70324958 ~ 70327126 (+) True G1105357

Expression Profile