RNA id: TU1256300


Basic Information

Item Value
RNA id TU1256300
length 1407
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1104857
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69683678 ~ 69695205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttagaTAGTGTTATTGTTGCTCACATTGAAATGTCTACATCTTTAACAAGTACAGAAAAAATAACGAAAACAAAAAGTGGAATAAAGAAGAATAGTGCGATTAGAGTTCATTCTTGCCATGGCACTCGTCTATTGACCATAGAGGATAGATAGACTTGGAGAAGGAAAGTATGCTCACTCCAGCCAGACAATGGAGGGAGTAGGTGCCATATGTCTCAACACTTTGTCCAACAAAAAGAGAATCAAAACAACTACTATATATTAACAGTTGGTACAGATTGAGACATTCAACTGTGACACTACAACAAAATGTATTCCGCTGACTCAAGCAATCCTGCAGTTGGAGAACAGATGTGATGGAAATAAAGAAAACTGTTTATTAGGCTGACATTATCAATGAGTAATCAATGATAATGACATTCTGAGGGTGaatatttttatattcaaatgtgtCATTCCATTtcagcaggaagagagagagagagaaagagagtcactATGTATTGTATTGTCTGTATTGTTTTTCATGAGAATATGAAAAACACAGTTATCCAAGTCATGACTGAAAGGTTACTAAACATTGTGACAATTATTCAACAGAGAGAGACCATATACAGCTAAGTTGATTAATAGGTCTTTACACAGGAAAtgatttaaacaaacaaaaaataaaaatctgattCTGTATACAAAATTAATACATGTTTTTTTCtcacaaaaaaaactaaattggACTACTTTTACAAAAGCATGGCATCCTCACATACACCCAGAGTACATCATTGACACAAATAGCTTTGATGGGCACCAAAAATAACTTCAAATGCATCACAAATAAATGTTTCAAATGCATTACAAATCTAGATCATTTCAATTATATAGATGCATATTATCTGAAGGCCTATGCAGTGCACAGTTTATTGTATGTAAATCCATGTCGATATATACTCTCTGGTTATTCTACATCCCCTATCttgccacaagatggcagcagctGCTCACTTCTTCCAAGAACAAGATCTCAATATGATTAGGCTGCAGAGATATCCAATCTAGGCCAGAGTGAAATTTGATACACATAATACAGGTCTTTGTGATTTAAAAGGAGTCTGTATTATCATATCTGCACAGTTATGGAGCAGCTTTAGAATATAGTCTGGACCGATAGTCAGAGACTAATGatatctcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaccctcagagtgtgtgtgagagtgactcAGCTCTTACTGACATCACAACTGGCCTTCCCGTGTTAATGGAGAGACGGTGACGTTTAACCCTAAACCTCTTCACCGTCACTACTACCTGTAGACTACTAGGACTGCTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256405 lncRNA upstream 56124 69624991 ~ 69627554 (+) True G1104956
TU1256352 lncRNA upstream 91265 69588532 ~ 69592413 (+) True G1104909
TU1256350 lncRNA upstream 187120 69496349 ~ 69496558 (+) True G1104907
TU1256341 lncRNA upstream 195617 69487777 ~ 69488061 (+) True G1104898
TU1256336 lncRNA upstream 206593 69476886 ~ 69477085 (+) True G1104893
TU1256299 lncRNA downstream 92089 69787294 ~ 69788417 (+) True G1104856
TU1256303 lncRNA downstream 104687 69799892 ~ 69805316 (+) True LOC110538170
TU1256572 lncRNA downstream 175813 69871018 ~ 69871310 (+) True G1105120
TU1256281 lncRNA downstream 181048 69876253 ~ 69878388 (+) True G1104842
TU1256582 lncRNA downstream 196013 69891218 ~ 69936515 (+) True G1105129
XM_021624797.2 mRNA upstream 71423 69610799 ~ 69612255 (+) True LOC110538162
XM_036938219.1 mRNA upstream 248401 69402993 ~ 69435277 (+) True LOC110538157
XM_036938216.1 mRNA upstream 362160 69315451 ~ 69321518 (+) False LOC110538155
XM_021557684.2 mRNA downstream 35052 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA downstream 35326 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA downstream 36694 69731899 ~ 69735305 (+) True LOC110486238
XM_021624807.2 mRNA downstream 104469 69799674 ~ 69819817 (+) False LOC110538170
XM_036938230.1 mRNA downstream 159575 69854780 ~ 69875030 (+) False LOC110538173
TU1256153 other upstream 366030 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1151817 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1178383 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 1178383 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1675201 67987694 ~ 68008477 (+) False G1103416
TU1256295 other downstream 128010 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 327503 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 327503 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 467484 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 629753 70324958 ~ 70327126 (+) True G1105357

Expression Profile