RNA id: TU1256281


Basic Information

Item Value
RNA id TU1256281
length 2136
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1104842
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69876253 ~ 69878388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGTAATATGATCATCTTTGAGTCTATATCCTCTGTGTCTGTGGATGGATGATGTGTCACAGACTGTGATGAATATTGTTTTTTCCTTCCGCTGGGGCCATGTGTTCCTATGTGTAGCAAGTACTTATCTGGTCCTCACAGTCCCAGAGCAGGAGCTATACCCAGTCACTGGGTATACAGCTGGAGGAATTGTTTGTTAGCTTATTCCTTGCCGAATTGTCACACAAGATGTACATTTCCGGTAGGGTTCGTGTAGACTGAGAGTCTGTCACCCTTTGTGGACCCTGTTTGATTCGCTCTTCGTGTAGCATTTCTGTGTACAGGCTCTGGCCTCGTTTCCCAGTTGCGATGTAACTTGAGCATTACGATGATTTGACCAGATGCATCGTTATTTACAAACCAATATTTTTTAAAGAGCTACTGCCTCtgtaattttggtcataaagtgtTTTGTTCCTCACATAGTGGCAAGTTGGGCAccatcagtaaattacacaatAATAGGACGTTAAAACGTGAATAGCTCCAAATTTGAATGACTTaaaaacctcaaaccaattgtaaaaatgtatatacaTGTATTGAAAGCATTTAAACTTTTACTCCAGTGAGCTAAATCAGGTTCACCcggagtgtttcttggtagtcttcaaaaatctactttgaaacaaagtatacacctcacacacatggttatgggctttaaaaTAGGAAGACACCTtgaccatgtcagatatagttgatatgtattcaattttgagtttgcatcccaatattacactttatttaCATCACAGaatactgaaatataacaaaactgtttgacacagaaacaccagattttcggcagtttaaaaaaaatgtataatgttgattaattatgaaattatgaaaaatatgaataacattccactcatgaggccactaggtcatttggcTGCATGAAAGAGCTACTGAGACAACCAAAAAAATATGCACGTGAAATTATTGTtccatttacattgtgtaattcAATGACATCCCTAACTATCCCCAGAGATAGGCTATCCAAAGGCAAACCAATCTTCGCCCCGATCGCACACCAGCCAGCTGAAGCTAATTGGCTAAATAATTTGGCTAACTATTCCCACCTGTGAACTCACCCACATTAAACCACACCCCGAAACCAACTCACGTTTGAATTCAGCCATGGCCGCTAGCATTTATTAACAAACCAAATCGAAAACGAGGCCAAATTAGGAAGTGCAGTCGCCCTTTAAGAGTGTTTCCCAAACAAGAATGTAGCGAGGCATAACGTTTGGGTCGTTAGACCATGTGTCAATACTGATTGGATCAAAATAAAAGGAGCACTCTCAAATCAgatttctccattcaaatctcaccttaacattataattataattatccCACAATCCTGACAATGGATCACCTCCTATGAGATATTACCACCTACAGTATGGCTGCAAATAGGCTATTGATGCAGGCTTATTATGCTTCCTCAATATGAATGCACTAAATCACAGAGTGGGCATTTAATTGCGCAAGTGTTGTCACACATCATGAAACACATTGAGGCAAAAAAATGACAGATAGTAGCCTTGTGGAAGAATAGAACTCTATTGATTGAACATTACATTCATTTCAGTCTGATTGAAATAGGCTACATGGCCTATATAGGCTATGTGTCTTTTAAAGCAGTCATCTCGCTTTTCATTTGAAGCATAATTGTATCCttgacccgtgtgtgtgtgtaacacataCTTTGGTAACTTTGTATTCGTAGTTAACTTCGTTTTGAAGTTGTCACAGTCAGACAGATAGAAGCAAGATGTTTAGGCTGTGTTAAGCAGAGAGCTGTGAATAAAGTGACGCAAAAGGGCACTTTGGGCACGAGTGGCCTGCGAAAGGTTTTTAAGAGCCACGTTACTAACGAAGGCTCTGGGAAAACAACTCGGCTACTGAAGACACATCGTAAGAAAGTTCTAACGATGATCTATCAAGATGAAGGCTCTGGGAGACAAGGCTCTGCACAGTGAGTgtatgttttagtgtgtgtgtgcgggatATAGCCTTAGTTAATATCACTGGAAGAACACATgcctcaataaaaaaaaaatctttatccTCGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256572 lncRNA upstream 4943 69871018 ~ 69871310 (+) True G1105120
TU1256303 lncRNA upstream 70937 69799892 ~ 69805316 (+) True LOC110538170
TU1256299 lncRNA upstream 87836 69787294 ~ 69788417 (+) True G1104856
TU1256282 lncRNA upstream 157971 69685230 ~ 69718282 (+) False G1104843
TU1256582 lncRNA downstream 12830 69891218 ~ 69936515 (+) True G1105129
TU1256284 lncRNA downstream 35203 69913591 ~ 69934462 (+) True LOC110538175
TU1256603 lncRNA downstream 38285 69916673 ~ 69917046 (+) True G1105148
TU1256280 lncRNA downstream 58510 69936898 ~ 69937341 (+) True G1104841
TU1256631 lncRNA downstream 97202 69975590 ~ 69976435 (+) True G1105173
XM_036938230.1 mRNA upstream 1223 69854780 ~ 69875030 (+) False LOC110538173
XM_021624807.2 mRNA upstream 56436 69799674 ~ 69819817 (+) False LOC110538170
XM_021557684.2 mRNA upstream 140948 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA upstream 140948 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA upstream 140948 69731899 ~ 69735305 (+) True LOC110486238
XM_036938232.1 mRNA downstream 29033 69907421 ~ 69935378 (+) False LOC110538175
XM_021624815.2 mRNA downstream 74034 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA downstream 74034 69952422 ~ 69957520 (+) True LOC110538177
XM_021626127.2 mRNA downstream 87118 69965506 ~ 69967488 (+) True LOC110539166
XM_036938243.1 mRNA downstream 166197 70044585 ~ 70048245 (+) False LOC110538185
TU1256295 other upstream 21058 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 558605 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1344392 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1370958 68504041 ~ 68505295 (+) False G1104149
TU1256653 other downstream 144320 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 144320 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 284301 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 446570 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 492367 70370755 ~ 70371211 (+) True G1105393

Expression Profile