RNA id: TCONS_00041034


Basic Information

Item Value
RNA id TCONS_00041034
length 1736
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_020824
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6456003 ~ 6465060 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGACTTTCGAGTTGTTTTTGAAGCTTCGCTGTCTTGCGAGATTTGACAACACATTTTgactaaattgtttttaaataattttatattacttCCTTGAGGCCACTCAGCTATGAAGAAAAATGAGAGTGTTTATTTGGATCTTATGGAGTGTCATCAAAGGTGTGTCTGATGCTGCTGCAGATAAAGTGTCAGTGATGGAGGGAGAATCTGCCACTTTGAATACTGGaattataaaaacacaaacagacagaatAAGATGGTATTTTAACAACAATCGCATTGCTGAACTCAATGGAGATCAGGTGAAGATCTGTGTAGATGATGTGTGTCCTGAAAGATTTAGAGGAAGACTGCAGCTGGACAATACATCTGGATCTCTGATCATCACAAACACCAGAAAGACAGACTCTGGACTGTATCAGCTGCAGATTAACAGCCGTAGAACAGAAAAGAAATTCATCTTGTCTGTCCAGGGTGCCCTTGGTGCTGATAGACTTGGATCATCAGTGTCTGTGATGGAGGGAGACTCAGTCACTCTATGCACTGGTGTTCAAACAAACCAAAGCAACAGAATTAACTGGTATTTTAATAAAGGGCGCATTGCTGAAATAATAGGCTATCGGCGTAAAGTCTGCGCAGATGATACCTGTCCTCAGAGATTTAGGGACAGACTGAAGCTGGACAGTCAGattggatctctgaccatcatgaAGGTCAGCACTGAGGACTCGGGACTTTACACACTCCTCCATCGTGGCAGAGAAAAAATCTTTAGGGTTGCTATTTTAGACAGTTCTACTGAAGAGAACTGGAAGCAGAAATCAGTGACAGAGGGAGAATCTATCACTTTAGACACTCCTATTAAAACAACTCCAAATGATGTGCTGAAGTGGTACTTTGGCGAGATTCTCCTTGCTGAAATCACTGGAGATGAGAGTCAGATCTGTGAAGATGCTCAGTGTAAAGATGGTGAAGACGaattcagagacagactgaagGTGAATCATTCATCTGGATTTCTAACCATCATGAACAGCAGGAAAGCAGACTCTGGAGAATATACACTACTGATCAACAGCACCAGCTTCTACATTAGTAGGAGCTTCTCTGTGATTGTCACTTTCTCAGGAATATCCTTAAGTACAGGAATTGGAATGTGTGTTGGTGTGCTGGTGCTGCTACTGCTGCTGGTGCTGCTGACGGCTGCTGCTATAGCTatttactttacaaaaaaaaaaaacacaatcgaACAAGAGATCAGAGAATGTATGTGTGTCAGCCACCAATCAGAATGTGTTTCTACTGAGTGACTCTTCCAATCAGACACCTCAAACTCAAGATGCCCCTCTAATGAGTAATGGCCGGTCATTATGCCTGTCATCGTTTATCTGTGGCTGTCCTGAAAGGGGGATAAACAAGTTTGAGCTGCTTGAGCATGTGCACATGAAGGTGGGACATCTTCAAAATGACCAAAACGACAGAATTAGGCCAGAGGGATGAGCCCTTCTGAATGGAAGATGCTAAGCATCCATCAGTTTTACCCGTTGAAATCTTTCATTCTGAAGTGCCTTTGGAAGTGGTCAGCACTTTGTTTTGGAATAACACTTCAATATTGCAGCAATGAATATCACTCCATACTGACATTGCTGCTTTAACTGAAGCTCTTTGAATGACTACTGTAGAACAACCAGCAAACTGCCTTGGGTCAACTGTCTTCATCAGctctaacaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-48 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000081687

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042322 lncRNA downstream 56286 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00042321 lncRNA downstream 209264 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042320 lncRNA downstream 288051 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042319 lncRNA downstream 389747 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042318 lncRNA downstream 446181 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00041039 lncRNA upstream 62354 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00041938 lncRNA upstream 98586 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00042323 lncRNA upstream 231457 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00042324 lncRNA upstream 262480 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00041046 lncRNA upstream 344306 6809366 ~ 6813803 (-) False XLOC_020838
TCONS_00041032 mRNA downstream 10142 6434672 ~ 6445861 (-) False XLOC_020823
TCONS_00041033 mRNA downstream 11196 6442226 ~ 6444807 (-) True XLOC_020823
TCONS_00041031 mRNA downstream 35764 6407445 ~ 6420239 (-) True XLOC_020822
TCONS_00041028 mRNA downstream 51097 6393227 ~ 6404906 (-) False XLOC_020820
TCONS_00041029 mRNA downstream 51196 6393642 ~ 6404807 (-) False XLOC_020820
TCONS_00041036 mRNA upstream 21988 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041037 mRNA upstream 22499 6487559 ~ 6499055 (-) True XLOC_020826
TCONS_00041040 mRNA upstream 81637 6546697 ~ 6562618 (-) True XLOC_020829
TCONS_00041042 mRNA upstream 167642 6632702 ~ 6651382 (-) True XLOC_020832
TCONS_00041044 mRNA upstream 299920 6764980 ~ 6777976 (-) True XLOC_020836
TCONS_00041030 other downstream 51093 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041022 other downstream 139024 6300311 ~ 6316979 (-) False XLOC_020818
TCONS_00041024 other downstream 139042 6313773 ~ 6316961 (-) True XLOC_020818
TCONS_00041023 other downstream 150940 6301699 ~ 6305063 (-) False XLOC_020818
TCONS_00041020 other downstream 173814 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041035 other upstream 11082 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041038 other upstream 50337 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041041 other upstream 122490 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041043 other upstream 196652 6661712 ~ 6662906 (-) True XLOC_020833
TCONS_00041072 other upstream 1149612 7614672 ~ 7617991 (-) False XLOC_020858

Expression Profile

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