RNA id: TU1256658


Basic Information

Item Value
RNA id TU1256658
length 1558
lncRNA type antisense_over
GC content 0.47
exon number 8
gene id G1105198
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70037408 ~ 70041331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTAAATAGGCCTTGATGTAGGTCTCATCCAGCTTAACTGCCTTTGTGCAGTCTTCAATGGCCTGGTCTATTTTTTCACCTTAGATCCCACAGTGCCCCTGTTACAGAAGAGCTTAGCATTGGTTTTGATGTTGTTGGGGTCTATAGTCAGGGCCTCAGAGTACAGCTCGTAGGCCGCATCATAGTTCCCATCCTTGAAGGCCTGGTTCCCATCTTCTTTCTTGGCTTTGAGTGCTTTGGCATTTCTGCAGGCCAGGCGAGCCTTCTCATGGTCAGGGGCCATGCGCAAGGCCTGGACAAAGAACTGGACAGCCTTGTCAATACAGTCCTCATAGTACAGACAGAGACCACGGACGTACAGGGCATCGCCATTAGTAGCGTCCATCCGCAGGATATCACTGGCTACCGACTGGGCCTCTGGGTAACGCCCAAGCATGGCCAGACACTCTGCTTTCAGCACCTTGAACCGATGGCAGGCTGAGGCCGACTCCAAGGCACGGTCCATGCAGAACACAACCATCCTGAAGTCATGCTTTTCAAATCCTATTTCAGCCATCTTTTCATACTCCAGGACGGAATCTGCATTCTTTACCTCCTGCTGTGCCTGGCTGTTGTCAGGCTCCAGTTCTAGAACCCTGTGGAAACAGCGGCTGGCTGCCATAGCGTTGCCCAGGGACAAGTGGCACTTCCCCTCCCGTAGATGACCCTTCATGAAAGTGTCGTCGAGCCGCACTGCCTGCTGGGAGTCCTCCAGCGCCTCTCTGTGCCGGCTCAGCATCATCAGCGTGGCCGCCCGGTTTCCATAGTAACTGGCATTCTTAGGACACATGTCTATGGCCTTGGTGTAGTAGTTGAATGCTTCAGAGTAATCCTTCTTGATGTAATAGGCATTACCCTGCTCCTTGAAGCTCTCCGCTTCCCTGGATGACAGAGAAATAAGACAGAAAGAGCTTGACAATGAGGCCATTTGTTGACATTACCCAAGAGAGAGTTCTAAGAAAACTGCATAATGACAGGATGTAGGGACGGGCATGACTAATCGGGTACTCAAACTGACATCAAAACTCCATCTTTAACCAGAGATCACTTTTTTTCCCAAATACTGTAAAACTATTTGATCAATTTCATCTTGAAGACAACATTCATTTGCTTTGACGCTAGTGTTCGATTtgtgggggacacacacacacacaaaggaaaaATAATCACAGTTCTGCTCCCTAAATTCCCTCCCCCCCCGTGTCTCACTCAATTGCATTCGGACCTCTCCCTCTACACATGCGTTTTGGAATAATTGCATAACTTTCCACTTAGGCTACTTTGGTGGTTGTCACAAGTTACCACAGCcaaaattgtctatattgtaaaaattcataaATAAAATGAGCtatttggtcttaatttaaggttaggcataccgTGAACAGAGTGGCCTTTTCCCATTTATCTCACtttgttatttgaaaatgaaatgaactccaaaatattgctatttttaaaacaatcCTTAGAGAGTTGTTGCAATTTctgtttaatccaccagaaaagagaACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256631 lncRNA upstream 60973 69975590 ~ 69976435 (+) True G1105173
TU1256280 lncRNA upstream 100067 69936898 ~ 69937341 (+) True G1104841
TU1256582 lncRNA upstream 100893 69891218 ~ 69936515 (+) True G1105129
TU1256284 lncRNA upstream 102946 69913591 ~ 69934462 (+) True LOC110538175
TU1256603 lncRNA upstream 120362 69916673 ~ 69917046 (+) True G1105148
TU1256657 lncRNA downstream 14709 70056040 ~ 70058980 (+) True G1105197
TU1256753 lncRNA downstream 141970 70183301 ~ 70183868 (+) True G1105291
TU1256768 lncRNA downstream 171956 70213287 ~ 70213629 (+) True G1105304
TU1256781 lncRNA downstream 198411 70239742 ~ 70239956 (+) True G1105317
TU1256786 lncRNA downstream 213753 70255084 ~ 70255358 (+) True G1105322
XM_021626127.2 mRNA upstream 69920 69965506 ~ 69967488 (+) True LOC110539166
XM_021624815.2 mRNA upstream 79888 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA upstream 79888 69952422 ~ 69957520 (+) True LOC110538177
XM_036938232.1 mRNA upstream 102030 69907421 ~ 69935378 (+) False LOC110538175
XM_036938230.1 mRNA upstream 162378 69854780 ~ 69875030 (+) False LOC110538173
XM_036938243.1 mRNA downstream 3254 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA downstream 4937 70046268 ~ 70048245 (+) True LOC110538185
XR_005035317.1 mRNA downstream 340838 70382169 ~ 70382221 (+) True LOC118937908
XM_021624850.2 mRNA downstream 599633 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 599633 70640964 ~ 70664813 (+) False LOC110538197
TU1256653 other upstream 12045 70022708 ~ 70025363 (+) False G1105194
TU1256295 other upstream 182213 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 719760 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1505547 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1532113 68504041 ~ 68505295 (+) False G1104149
TU1256743 other downstream 121358 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 283627 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 329424 70370755 ~ 70371211 (+) True G1105393
TU1256950 other downstream 570972 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 861574 70902905 ~ 70906429 (+) False G1105655

Expression Profile