RNA id: TU1256657


Basic Information

Item Value
RNA id TU1256657
length 2887
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1105197
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70056040 ~ 70058980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACATTTGTCTCTTTTGTAGGTTAAAAAACAAGTACAGTAAAACCATGTAaataaaacaaacaagaaaaaacAAGCAAAGTATTTCTCCTTTCCATGTACAGCGTGTGTCTGCTGTAGCCTACAACAACAGTCTAACCTCAGCTAAGATAGTGTTTCATCAAGATAAAGATAACAATAGCAACTTTGATAAAATGTCTATATTTACTCTATATTTTCTACATAGATCATTTGCCTTCTCtagatgtatttatttaataaaaatgTCCTTAAAATGTCTGAATACCATAGAGTTCCCATGtaatgatagatagatagacagacagagagaacactggAGATCAATAGGCTGGCTGGTTCACTGAGTAACTTACTGTGACTGGAGAGAATCACATTGGTATGGCAAAGAGACCTGATGGCTTGGTTTAATATTCCCATAGACAAAGGCCTCAGAAACATGTACAGAATCAAAGAGATTTAAAAAGATGGAGGAGAAACAGTGCTGGGTTTGATCTAGAAGGGCAATAACAAGGTCTTCACTGCAGGTGGCGCTGCTGCGTCACACACATGGAAATACTATTGCACTGACTGAACTGAAGGGAACAACATAGCTGCATAGGATTTCCCCCATTTTGCTGTTGCTAAAGCAGACTGGTTGGGTGTAAGTGTTGGGATTGGTAATACACCAGCAAAGAGAGTTGGTATTGGGATAAATCAGGAGACCCAAGTATTGGGGCCGGTCTGGTGGGGCTATTGAGTGTTTGTTTAAAGGTGGGTCTACTTGTTTAGGAGAGAGGGGTATGGGAATATGATTATGTGTTCTACTGCACTTGCGACATCAATAACACTGGCTGTTCTGTGTAATCCATATAATCGCCGTGTCCTGCTCCTCTGTAAGGTGAAAGCCCAGCAAtgtcaacacagagagagggctgAAGCATCATGAGAATGAGATTGACCATCAAGGAAAAACGCATCACAACAACCCATCAGTTCAAATTACTCTTGGAATTGGCCTTTCAAATACAGTACGGTAGGCTGTAGAGCATCTCTGTAGAGGTACAGATACATTGTTCAGAATCAGATAAAGCCATCTCCCCACATCCTATATTCTCCTACTGTATAACCGTTCGAAACACAGACACATTGATTGAACGTATTGCTTTAAAAATGTAACTAGATCTGAGATTTAGATTCAGACCTGTCTCATggataacaacaacaataaaattGAATCGTTATAAGTTGATTGTTTGTGTGATTGAAAAAGGCTAAATCAAACTCTCGTGAGTTTATGAAAAATCACACCAGGAACAAGAACAAAAAACTAGAACATATTTTCATTGCTTTCATAAGTAAATCTGTTTAAGGTGCTTTTAATGTGGTTGCCATGGCACTGTGCTTTGTTTCTTTCCCTCCATTCTTGATGATCCAATCGGTGATCTGGGAAATGtgttctcacccccccccccatacatcTCTGCACAGTGGAAACCTTTAATCGAAGATTGTAAACCCATCAAGTAATTTCTACCCCTTAGTGTTTTTTTTGAGCAAGGGGAAATTGTCATTCACTGCTATCCATCAGCTCCTGCTGAGATAGCTCAAGAGAAAATTAAGGACTATGGCTCAGGGAGTACAATTGGGGGATCAAGCACTATAAAATCACTGGGATACAGGGAACCATGGCAGATTATAATATAAGACAGCTAGGcttttaaaaatgattttgtgCTGCCTGTTCCGCaacgagagaaatagagacagtcaGAACCAATGCACCAGCACTGCTACGGAGCAAAGATATTTAATGAGGCAGATCTGCAACTTGAGACAAAATCAAGTTGACAAGCTGACCTTTTCAGGACCTTAATGAGTGCTTAATTCTGGGGATGCAGGGTAAAAAATGAATTATGAAAGGCCATGTTGGGCtgtgactcagagagagagaacgagaaaaataaagagagagggagagaaagggcttAATCATCTATTCTACACATCAATTGAGAGCTCTGGGTTCCAATGACAAGAGCCCAGTAACGGTTTGGGAGATAGGGGCTTGGTGGAAGGGTGTTGGTGTTAAAATATGAGTTCATATAGTTCAGACAGATCCCACTCATAGACTTGGGTCCGTAGGACTGCAGATCTGCAGCGCCACATATGGCTGAAGAAAGTCACAAGCTCAGAGAGCATTGGGCTCACCTGCTAGCATCCCCAATATCGACCCATAACAACAAAAAGCAAGCCAACCAATTATAGAAACAATGTTCTGAGGAGTAGCATGACGTAAAGGGACCTTATTTGTGGCAACCACACTAAACAGATACATCTATTTTTGTTCTCTAATAAATTACACAATAATATTAAGAATCCAAACCAAATCGACCCATGAAATGGCTGTGTAAGAGAGAGGCCTCCTGGCTGCACCAGTCTGTCCATGGAGGTGTGTCCTGTTCCTCAGGCCACCAACCACAGAAGAAGGAGACAGATAGGGtgtggtggagaggaggcaggGCCTTGGCATTGGGGGTGTGTCCTCCATGACATGAGCAGTTGTTAGCctcgttctctctgttctctccatcctgGTTTCTGTGGTCTGCATAGTTTGTGCGTGGCGTGGCCCTCGTCATGTGGGTCACAGTAATGGAGGCAGGGCAAGGGGGTTggtagagggggacagagggacggGGGGCTGTACTGTGTCATTAATAAGGGGAGAAGATGATGGAGGGGTGCGTGGCCCTCAGGGGCCCCGGGGCGGGCCGGAACAGGGTGGGGCTCAGGAAGGGCGTCTGAAAGAAGGTGGTGCCCGCCGGGTGGCGCAGAGCCAGAGGATTGGTTGCCATGGTGCACAAGGTGGGCTGGGTGAGGGGGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256658 lncRNA upstream 14709 70037408 ~ 70041331 (+) True G1105198
TU1256631 lncRNA upstream 79605 69975590 ~ 69976435 (+) True G1105173
TU1256280 lncRNA upstream 118699 69936898 ~ 69937341 (+) True G1104841
TU1256582 lncRNA upstream 119525 69891218 ~ 69936515 (+) True G1105129
TU1256753 lncRNA downstream 124321 70183301 ~ 70183868 (+) True G1105291
TU1256768 lncRNA downstream 154307 70213287 ~ 70213629 (+) True G1105304
TU1256781 lncRNA downstream 180762 70239742 ~ 70239956 (+) True G1105317
TU1256786 lncRNA downstream 196104 70255084 ~ 70255358 (+) True G1105322
TU1256790 lncRNA downstream 204680 70263660 ~ 70263902 (+) True G1105326
XM_036938243.1 mRNA upstream 7795 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 7795 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 88552 69965506 ~ 69967488 (+) True LOC110539166
XM_021624815.2 mRNA upstream 98520 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA upstream 98520 69952422 ~ 69957520 (+) True LOC110538177
XR_005035317.1 mRNA downstream 323189 70382169 ~ 70382221 (+) True LOC118937908
XM_021624850.2 mRNA downstream 581984 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 581984 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 581985 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 581985 70640965 ~ 70664813 (+) True LOC110538197
TU1256654 other upstream 7053 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 30677 70022708 ~ 70025363 (+) False G1105194
TU1256295 other upstream 200845 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 738392 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1524179 68528281 ~ 68531861 (+) True G1104162
TU1256743 other downstream 103709 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 265978 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 311775 70370755 ~ 70371211 (+) True G1105393
TU1256950 other downstream 553323 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 843925 70902905 ~ 70906429 (+) False G1105655

Expression Profile