RNA id: TU1256827



Basic Information


Item Value
RNA id TU1256827
length 235
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G1105358
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70317694 ~ 70317928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGAAGACGCCGAGTTTCTCGAGCTTTTTCGCCCGTGGAAAAGCTCTGACTTGGGCTTTTTTCTGACTCGCCCGCTGTTGTTGGCTAAGACCTGGTCTGACTGGGTCACTGTTCCCCGATCCAGATCCCACCGCAGCAGCGTTAGACCCAGCAGTCCCACCAGACTGAGCTTGATGTAGCCGGGGTTGCAAGGCCTGTGCCGCCGGGTCCGACATATCAAAACGCACGCTTCACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1256821 lncRNA upstream 364 70317127 ~ 70317330 (+) True G1105355
TU1256820 lncRNA upstream 1562 70315834 ~ 70316132 (+) True G1105354
TU1256819 lncRNA upstream 1956 70315444 ~ 70315738 (+) True G1105353
TU1256809 lncRNA upstream 20486 70296818 ~ 70297208 (+) True G1105343
TU1256808 lncRNA upstream 21595 70295119 ~ 70296099 (+) True G1105342
TU1256823 lncRNA downstream 782 70318710 ~ 70324432 (+) True G1105356
TU1256840 lncRNA downstream 25558 70343486 ~ 70343770 (+) True G1105371
TU1256841 lncRNA downstream 26475 70344403 ~ 70344709 (+) True G1105372
TU1256842 lncRNA downstream 27548 70345476 ~ 70345721 (+) True G1105373
TU1256843 lncRNA downstream 29960 70347888 ~ 70348224 (+) True G1105374
XM_036938243.1 mRNA upstream 269449 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 269449 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 350206 69965506 ~ 69967488 (+) True LOC110539166
XM_021624815.2 mRNA upstream 360174 69952422 ~ 69957520 (+) False LOC110538177
XR_005035317.1 mRNA downstream 64241 70382169 ~ 70382221 (+) True LOC118937908
XM_021624850.2 mRNA downstream 323036 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 323036 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 323037 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 323037 70640965 ~ 70664813 (+) True LOC110538197
TU1256743 other upstream 123022 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 268707 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 292331 70022708 ~ 70025363 (+) False G1105194
TU1256295 other upstream 462499 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 1000046 69315732 ~ 69317648 (+) True LOC110538155
TU1256825 other downstream 7030 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 52827 70370755 ~ 70371211 (+) True G1105393
TU1256950 other downstream 294375 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 584977 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 584977 70902905 ~ 70906429 (+) False G1105655

Expression Profile