RNA id: TU1256927


Basic Information

Item Value
RNA id TU1256927
length 2273
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1105450
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70472336 ~ 70474775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttttggAACACAACCGAAGTGCTAAAACCCAACAAACGTGGAACTAACACTGAACAGAACACAGCCTCATACACAGCTTCCAGGGTACATAGATTAACCAAGGTGAAGCAAAGATCCAAGTTTGAAATGATCAGAATAGTGTAACAACAAAAAAAGGACACGTCACAAGAATTCTGTAGCTTTGACTCTTCAAAAAACATCAGTGAAATCAAGAACTACAAAGAAAAAAACTAGCTGCTTTGAAACGGGAAAATGAAAGGAACAAAGATAGGAAAAGACTAAATAATGTCAGCTGGACAAACACAAAAGCAACATTCTTCTGAATCCCGTTTGCAATATGGCTTTTTTCAGAAACTTCTGATGGAACCTAAGAGGTTGCAGTGGCTGCCATGTTCTACGGACAACCTCCTCAGGTCATGCAAGGGGATTACATTCAGAGGGGCGTGCCACAGACGTACAGTATACTGTAATAAAATAGAATTATGGTACAGAAAATAAATTCATATATGCGTTATATAGATAGCAaatgaggctggtgggaggaACTCTATTTGTCTTTTTTTCATTTTAATGATACATCAACCAAGCATAGGGCTTCATTCCTGAGAGGGCAGAGCTTATGAGTAGAGGggatgggttgtgtgtgtgtgtatgtgtgtgtaatatgaCTGTGGAGGTTGTGTGGTGTTGTTGTCGTCATGATATTGCCCAATGGTTCagaagtgcgtgtgtgtgtatgtggggggagTGTGGGGGTAAACAGCGTAGCCACGGCAACAGGTGGATCTATCATTACATGCTTTATTAAACTGCGGTAGCTAAAGTGTACTATGTGTAAAAGTGTACTGGACTAATTCTGCTGGGAGTATATGGAGACAGACCCACTACAATATCTTGGCTGAAAGACAGGGAGTGAGCCAGTGCCAAAATATCCCACATTTTAAGGTAGCAATGGCCTTCATGCTCAGGACTGATGAGTCAAGTGTTCAAGCGCCTCATATTGTCTGCACACATAGCTATATATCTGTACCTCAGGTTGTCAGTTGATGTTTTAAGTTAtatcacacagagacagacatgcaCATGCAGACTTAGTAACAGTGACCAGTAATAACAGCAAACAGGAGACAGGCTTActgacagagatagacagagagagaaaacaaacagactgaggcagacagacaggagtacCATCACGGCTGGCTCCAGACATTAGCGATATATGCGGTCGCTTAGGGCCCGGgccgtgaaaaaaaaaaaactcagttgGGGTCTAAATTTACTGTTGAAAGTTAGAAGGTGAAGGttcgaaatgtggttgtgcatcagcagtttttctcctGTTTTGTCATTGACAGTCACTTAATTAGCCATGTCCGCTAACAGCTAGTTAGTCTAGCTAATCacactcactcagatatcattaacatgacATAAGtaatggcaaaatgtgtggaattacaggaaatttgctttagAACTGCAAAAATGTATCTCCACCACATGGCAAAACTGGTAGCATTGTAGGGAATTAGCTTGAAATGTTCAAAACATGCATCTCTGCCCCATGGTAAAATGAGTTGAATTAGATCTCCACTAGTCATCTCAGGTTTATGGATGGAGTAGTTAGTGTACTTCAGCAGATGCACAATACTAAGCCAATAAGGACCCCGTATAGAGACTCTTCAGTCCTAGCAATGAACTTTCCTTCAGATCTCCCAACTAAACCCCAACCTCCACACACATCCCAGTGACCTCAGCTCCCCTACACACATCCAAACAGCTCcccaaatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaaagtgctgacaacaaaatcacacaaaaattatcagtGGAAATcatatttatcaacccatggaggtctggatttggagtcacactcaaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtccttaaaacaagataaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatctgccaactcctagacagtctgtggtgcaacgtggcgttggtggatggagcgagacatgatgttccagatgtgctcaattggattcaggtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256916 lncRNA upstream 10733 70461243 ~ 70461603 (+) True G1105442
TU1256843 lncRNA upstream 124112 70347888 ~ 70348224 (+) True G1105374
TU1256842 lncRNA upstream 126615 70345476 ~ 70345721 (+) True G1105373
TU1256841 lncRNA upstream 127627 70344403 ~ 70344709 (+) True G1105372
TU1256840 lncRNA upstream 128566 70343486 ~ 70343770 (+) True G1105371
TU1256934 lncRNA downstream 8251 70483026 ~ 70491194 (+) False G1105452
TU1256936 lncRNA downstream 9051 70483826 ~ 70484457 (+) True G1105453
TU1256932 lncRNA downstream 14890 70489665 ~ 70491194 (+) False G1105452
TU1256933 lncRNA downstream 26032 70500807 ~ 70506853 (+) True G1105452
TU1256960 lncRNA downstream 32288 70507063 ~ 70507438 (+) True G1105477
XR_005035317.1 mRNA upstream 90115 70382169 ~ 70382221 (+) True LOC118937908
XM_036938243.1 mRNA upstream 424091 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 424091 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 504848 69965506 ~ 69967488 (+) True LOC110539166
XR_005035128.1 mRNA upstream 514816 69952422 ~ 69957520 (+) True LOC110538177
XM_021624850.2 mRNA downstream 166189 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 166189 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 166190 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 166190 70640965 ~ 70664813 (+) True LOC110538197
XM_021624853.2 mRNA downstream 259464 70734239 ~ 70736353 (+) True LOC110538199
TU1256863 other upstream 101125 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 145210 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 277664 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 423349 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 446973 70022708 ~ 70025363 (+) False G1105194
TU1256950 other downstream 137528 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 428130 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 428130 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 428130 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1466776 71941551 ~ 71942799 (+) True psmg3

Expression Profile