RNA id: TU1256934



Basic Information


Item Value
RNA id TU1256934
length 517
lncRNA type antisense_over
GC content 0.55
exon number 4
gene id G1105452
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70483026 ~ 70506853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTTGAACTGGGACCAGGTCATGGTCATGCCGCGGTAGTCATCAGGGTTGATGCTGGAGCTACTGAAGGCTTTCTGGGCCAGGAAGACCAGGTTCTCCTCTGAGAGGCCACGGTTACTCTGCACCTCCGCCTTGTACTTCATGTTGAGGGCCTCACACAGCTGGGGCCACAGCACCTTGTCAGGCACTATGAAGGGCACCCGAccGGGTTCGGCAAAAGCGTTGTCCCACAGCACTGTTGCCGTGGCGTTATTGTCTTGGCTACCGTGGACGATCACCACCACAGGAAGTGATAACGtCTTAACCTGAAAGACCAGCTCATTACCCCCGACGCTGAACTGAGACTCAAACAGAATGGTAAACTTCTCCTCTGTCACAGACTCTGCCCCTCGCCGGTCCGAGCGCTTGATCCTCTTCAAAGACATGTTCCTGAAGTTGGCGCTGAGTGTTCCTGTGGCCTGGTGGTACTCCATCACACAGTTGTTGTTAAGGATCTCTCCACTGCTGTCactgggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1256927 lncRNA upstream 8251 70472336 ~ 70474775 (+) True G1105450
TU1256916 lncRNA upstream 21423 70461243 ~ 70461603 (+) True G1105442
TU1256843 lncRNA upstream 134802 70347888 ~ 70348224 (+) True G1105374
TU1256842 lncRNA upstream 137305 70345476 ~ 70345721 (+) True G1105373
TU1256841 lncRNA upstream 138317 70344403 ~ 70344709 (+) True G1105372
TU1256933 lncRNA downstream 9613 70500807 ~ 70506853 (+) True G1105452
TU1256960 lncRNA downstream 15869 70507063 ~ 70507438 (+) True G1105477
TU1256961 lncRNA downstream 21637 70512831 ~ 70568984 (+) True G1105478
TU1257013 lncRNA downstream 81045 70572239 ~ 70572498 (+) True G1105529
TU1257015 lncRNA downstream 85372 70576566 ~ 70576930 (+) True G1105531
XR_005035317.1 mRNA upstream 100805 70382169 ~ 70382221 (+) True LOC118937908
XM_036938243.1 mRNA upstream 434781 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 434781 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 515538 69965506 ~ 69967488 (+) True LOC110539166
XR_005035128.1 mRNA upstream 525506 69952422 ~ 69957520 (+) True LOC110538177
XM_021624850.2 mRNA downstream 149770 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 149770 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 149771 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 149771 70640965 ~ 70664813 (+) True LOC110538197
XM_021624853.2 mRNA downstream 243045 70734239 ~ 70736353 (+) True LOC110538199
TU1256863 other upstream 111815 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 155900 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 288354 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 434039 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 457663 70022708 ~ 70025363 (+) False G1105194
TU1256950 other downstream 121109 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 411711 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 411711 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 411711 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1450357 71941551 ~ 71942799 (+) True psmg3

Expression Profile