RNA id: TU1257015



Basic Information


Item Value
RNA id TU1257015
length 365
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1105531
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70576566 ~ 70576930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caggtctctgacctcctccctataggttgtctcgtcattgtcagtgttcaggcctaccactgttgtgtcgtctgcaaacttaatgatggtgttggagtcgtgcctggccatgcagtcgtgggtgaacagggagtacaggaggggactgagcacacacccctggggagctccagtgttgaggatcagtgtggtagatgtgttgctacctaccctcaccacctgggagcgacccgtcaggaagtccagggatccagttgcagagggaggtgtttagtcccaggatccttagcttagtgatgagctttgagagcactatggtgttgaacgctgagctgtagtcaatgaatagcattctcacataagtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1257013 lncRNA upstream 4068 70572239 ~ 70572498 (+) True G1105529
TU1256961 lncRNA upstream 7582 70512831 ~ 70568984 (+) True G1105478
TU1256960 lncRNA upstream 69128 70507063 ~ 70507438 (+) True G1105477
TU1256933 lncRNA upstream 69713 70500807 ~ 70506853 (+) True G1105452
TU1256932 lncRNA upstream 85372 70489665 ~ 70491194 (+) False G1105452
TU1257019 lncRNA downstream 3409 70580339 ~ 70580599 (+) True G1105535
TU1257023 lncRNA downstream 8036 70584966 ~ 70585292 (+) True G1105539
TU1257024 lncRNA downstream 8487 70585417 ~ 70585660 (+) True G1105540
TU1256949 lncRNA downstream 10236 70587166 ~ 70588997 (+) True G1105466
TU1256959 lncRNA downstream 18489 70595419 ~ 70596175 (+) True G1105476
XR_005035317.1 mRNA upstream 194345 70382169 ~ 70382221 (+) True LOC118937908
XM_036938243.1 mRNA upstream 528321 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 528321 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 609078 69965506 ~ 69967488 (+) True LOC110539166
XR_005035128.1 mRNA upstream 619046 69952422 ~ 69957520 (+) True LOC110538177
XM_021624850.2 mRNA downstream 64034 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 64034 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 64035 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 64035 70640965 ~ 70664813 (+) True LOC110538197
XM_021624853.2 mRNA downstream 157309 70734239 ~ 70736353 (+) True LOC110538199
TU1256863 other upstream 205355 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 249440 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 381894 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 527579 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 551203 70022708 ~ 70025363 (+) False G1105194
TU1256950 other downstream 35373 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 325975 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 325975 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 325975 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1364621 71941551 ~ 71942799 (+) True psmg3

Expression Profile