RNA id: TU1257024


Basic Information

Item Value
RNA id TU1257024
length 244
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G1105540
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70585417 ~ 70585660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttacatacgatagaaataagctgaaacatttttatgtaattgatttaattattcttttggccaaatttcataaacactaatgtaaatttacaaacaaaaaaacacattttcttacccttcaaaaataaattgaactgtattttaagacagttaaatactctactaacaaaaaagctgttagtaTTGTAAGtatatgtcccttaaggtccttgtgtaattgtaatgtgatattgtacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257023 lncRNA upstream 125 70584966 ~ 70585292 (+) True G1105539
TU1257019 lncRNA upstream 4818 70580339 ~ 70580599 (+) True G1105535
TU1257015 lncRNA upstream 8487 70576566 ~ 70576930 (+) True G1105531
TU1257013 lncRNA upstream 12919 70572239 ~ 70572498 (+) True G1105529
TU1256961 lncRNA upstream 16433 70512831 ~ 70568984 (+) True G1105478
TU1256949 lncRNA downstream 1506 70587166 ~ 70588997 (+) True G1105466
TU1256959 lncRNA downstream 9759 70595419 ~ 70596175 (+) True G1105476
TU1257049 lncRNA downstream 52382 70638042 ~ 70638477 (+) True G1105565
TU1257059 lncRNA downstream 80140 70665800 ~ 70666048 (+) True G1105573
TU1257115 lncRNA downstream 175382 70761042 ~ 70774919 (+) False G1105619
XR_005035317.1 mRNA upstream 203196 70382169 ~ 70382221 (+) True LOC118937908
XM_036938243.1 mRNA upstream 537172 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 537172 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 617929 69965506 ~ 69967488 (+) True LOC110539166
XR_005035128.1 mRNA upstream 627897 69952422 ~ 69957520 (+) True LOC110538177
XM_021624850.2 mRNA downstream 55304 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 55304 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 55305 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 55305 70640965 ~ 70664813 (+) True LOC110538197
XM_021624853.2 mRNA downstream 148579 70734239 ~ 70736353 (+) True LOC110538199
TU1256863 other upstream 214206 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 258291 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 390745 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 536430 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 560054 70022708 ~ 70025363 (+) False G1105194
TU1256950 other downstream 26643 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 317245 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 317245 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 317245 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1355891 71941551 ~ 71942799 (+) True psmg3

Expression Profile