RNA id: TU1256950


Basic Information

Item Value
RNA id TU1256950
length 1674
RNA type TUCP
GC content 0.46
exon number 3
gene id G1105467
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70612303 ~ 70633971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAgacatgtattttatttgttcACCTTTGCTGCCGGCACAAACAAAATTGGATAGCACTTACATTTCTGTATGTCACTATAGACTTTCATTTAACTGTCACCTGGCACATTGACCTGTGCTGGAGGGGTTCTTACAAGATTCTCTCCTTTGTCTCCCCACAATTACAGCACCCAATGCAGTCCAGGTGAAGTGCTGGATATATCCTGTCGTTAGCTGTGGCCATGGTGATAGATTCAATAAGCAAGGCTCTGTCAATCTCAGACAGACTCCTCTTCCAGGAGAGAAGCCTCTGGAGTAACAGTAACGTGGCAGGTTAACACAGTTATGTCTGTGCTTGTTATAgcatatatgtacagtacatgcatgAGTCTTGTAGCACAATGAGCATACATGCACACAGTTGTACAATGTGTGTCAGTacaattaaaaatgtttttttttatttgtatttttatgaacGTTATCATGTAAGCACAGTGAGAGAAAAAACAAGGAAACAAGTTAACTTCTACAGAACGACGGCACTAGGAACCTTTGATCAGTGACCAGCCCTAGTAACAACCAGGTAGTTTGGTGGTTACACTGGTAACTTAAAACTGAGAGTAAGATAACGATTTTCCAGATATCACAATATAGTACAACTTAGAAACTTGATGaaacattctttaaaaaaaggaAGGCAAAACTATGCAACTAAATTCAGATCTCTTTCAAGTCGTCACTAATCCTTCATCCTTCTCGTTCTCTgtttcaaaacaacaacaaaaaataggaTCTGTTGCGATCCTGTTTTTTACGTGaaaaacttttgaaatatttaaaGAGGATTACTTTACACACCTGGCACCCATCCACCCCATAACATAATTTAAAGGTACACTAGTTTTTCCCTGATTGGCTCAGGATTTGTGGCTGAAGAGAACCTTGAAGTGTCGTCTCTTGAGCAGCTCGTTCTCGTTGCTCTCCAGCTTCTTGATCTGGCCCGCCTGCTTCTCCAGGTTGGTGCGGACCGTCTTCACGTTGACGCTGACCTTGCGCACCTTGTCCAGCATCTTGTTGACGGTGTTGGCCGTGCCAGTGTGGCTCTTGGACAGCTTGGCCAGCTCTCCCTGGATGCAAGAAACAGACTTCTCCATGTCCTGCTGTCTGGTCTCCAGCCCGTTCTGGGTCTGCTGGATCTGGTCAACCACCCCGATGATCTTGTCCAGCAGAGTCAGCACCATGACCCCATTTACCTGCGCCTCACTCTTGGTGCCCGAGCCCGTGGCCAGCACCAGGGACACCTCCTCGTCGTCGTCAGACACCTCGGTCAGAGCCACTCGCCCCTTCTGCAAGCCTGCTGGATCCGCCATGGCTGTCAAGTCCAAACACACACCGCTCAGCTCTCACGCTCACTCAGGATAAAAATACACTACCGGGAGAACAAACTTTGAGGGGCCACCCTGACCAAAATTCTGATCCAAATACTTTTCCTTTCTATGAAGGGACACTTCCACTTCCTTGGCGTTTTTCCTCTTCCCAATTTCAAGTCTACTTGTCTTCTTGCTGTATTACTTTTCCTCCTTTTTCTCTTAttctcagtctttctctctatctgtctttgCGTCTGCCCTGGGATGCTGGCCAACCAACGGGAGTGGAGCCTCTCACTGCTGAGGCATGTGTGTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256959 lncRNA upstream 16128 70595419 ~ 70596175 (+) True G1105476
TU1256949 lncRNA upstream 23306 70587166 ~ 70588997 (+) True G1105466
TU1257024 lncRNA upstream 26643 70585417 ~ 70585660 (+) True G1105540
TU1257023 lncRNA upstream 27011 70584966 ~ 70585292 (+) True G1105539
TU1257019 lncRNA upstream 31704 70580339 ~ 70580599 (+) True G1105535
TU1257049 lncRNA downstream 4071 70638042 ~ 70638477 (+) True G1105565
TU1257059 lncRNA downstream 31829 70665800 ~ 70666048 (+) True G1105573
TU1257115 lncRNA downstream 127071 70761042 ~ 70774919 (+) False G1105619
TU1257119 lncRNA downstream 136502 70770473 ~ 70771516 (+) True G1105619
TU1257151 lncRNA downstream 185192 70819163 ~ 70827806 (+) True LOC110538205
XR_005035317.1 mRNA upstream 230082 70382169 ~ 70382221 (+) True LOC118937908
XM_036938243.1 mRNA upstream 564058 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 564058 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 644815 69965506 ~ 69967488 (+) True LOC110539166
XM_021624815.2 mRNA upstream 654783 69952422 ~ 69957520 (+) False LOC110538177
XM_021624850.2 mRNA downstream 6993 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 6993 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 6994 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 6994 70640965 ~ 70664813 (+) True LOC110538197
XM_021624853.2 mRNA downstream 100268 70734239 ~ 70736353 (+) True LOC110538199
TU1256863 other upstream 241092 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 285177 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 417631 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 563316 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 586940 70022708 ~ 70025363 (+) False G1105194
TU1257166 other downstream 268934 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 268934 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 268934 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1307580 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 1383622 72017593 ~ 72018290 (+) True LOC110538241

Expression Profile