RNA id: TCONS_00041938


Basic Information

Item Value
RNA id TCONS_00041938
length 317
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_020830
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6563646 ~ 6565961 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAGTGAGTGTCTCATTTCTGCCCTGCTTTTATGGAAAGCAGTGGTTTGaaTGAATATGATATTATTCCATTTGTAAAATTAAGCTGCTCGTTCTCATCATCGGGAATAGGGtctaaaaaaacaatgaaatataaGGAATATCAGAAAATTATCAGGAAAAGAAATAAAGCTTCTTAGAATTCTCAGGAAAATCTTGAGATCAGGAGCAAAAATTAGATAGCAGAAAGAAAGAGCTGAAACCAGAAGAATAATTAaacctaataaaaaaaagatattggtGAAAATATTGCTCTACCTTAGGCAAGGAAACACATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041039 lncRNA downstream 34269 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00042322 lncRNA downstream 163929 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00042321 lncRNA downstream 316907 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042320 lncRNA downstream 395694 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042319 lncRNA downstream 497390 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042323 lncRNA upstream 130556 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00042324 lncRNA upstream 161579 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00041046 lncRNA upstream 243405 6809366 ~ 6813803 (-) False XLOC_020838
TCONS_00041047 lncRNA upstream 243567 6809528 ~ 6818528 (-) True XLOC_020838
TCONS_00042325 lncRNA upstream 269798 6835759 ~ 6854584 (-) False XLOC_020839
TCONS_00041040 mRNA downstream 1028 6546697 ~ 6562618 (-) True XLOC_020829
TCONS_00041036 mRNA downstream 64569 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041037 mRNA downstream 64591 6487559 ~ 6499055 (-) True XLOC_020826
TCONS_00041034 mRNA downstream 98586 6456003 ~ 6465060 (-) True XLOC_020824
TCONS_00041032 mRNA downstream 117785 6434672 ~ 6445861 (-) False XLOC_020823
TCONS_00041042 mRNA upstream 66741 6632702 ~ 6651382 (-) True XLOC_020832
TCONS_00041044 mRNA upstream 199019 6764980 ~ 6777976 (-) True XLOC_020836
TCONS_00041045 mRNA upstream 222800 6788761 ~ 6801876 (-) True XLOC_020837
TCONS_00041048 mRNA upstream 263505 6829466 ~ 6849585 (-) False XLOC_020839
TCONS_00041049 mRNA upstream 315484 6881445 ~ 6884981 (-) True XLOC_020840
TCONS_00041038 other downstream 43620 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041035 other downstream 87388 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041030 other downstream 158736 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041024 other downstream 246685 6313773 ~ 6316961 (-) True XLOC_020818
TCONS_00041023 other downstream 258583 6301699 ~ 6305063 (-) False XLOC_020818
TCONS_00041041 other upstream 21589 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041043 other upstream 95751 6661712 ~ 6662906 (-) True XLOC_020833
TCONS_00041072 other upstream 1048711 7614672 ~ 7617991 (-) False XLOC_020858
TCONS_00041073 other upstream 1049778 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041090 other upstream 1780114 8346075 ~ 8346200 (-) True XLOC_020873

Expression Profile

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