RNA id: TU1257115


Basic Information

Item Value
RNA id TU1257115
length 1696
lncRNA type antisense_over
GC content 0.56
exon number 10
gene id G1105619
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70761042 ~ 70774919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCCAGGACCATGACCATCTCTGGCTTGAGATCATAGGCCCCCAGACACTGGACCAGTTTGGGGTGGTGCAGGTAGTTCATCAGCTCCATCTCTTTACGGGCCGCCTCCCTCTCCTTGACTCGCCGGCCCTTGTAGAACTTTCCGGCACACACACGGCCCGTCTGCTTGTGAGTGAGTTTGAACACCTGGCCAAACCTCCCCACTCCCAGTTTCTCCAGTACATTGTAGTGATCGGTGACCTTGTGGGTGGAGTCGATGGTGACGTCCTCATATGTCCGAGGAGACTCCTCCTCTTGTGGCTCAGCTATCTGCTCCATCTTGATAAGCTGAGACTCCTCACTGGGCTCGCTCACCCCCACCACGTTGTAGGCCCTCACCCGGAAGCAGTACTCCGCCTGAGGCTCAAGCCCTGAGCGCACCTTGTAAGAAGTACTCTTGCAATGGGCTGAGAGCGCACTCCAGTCCCCAGACTCAGCGGGGCCTTTTCTCCTCACCTCCACCACATAGCCCAGGACAGCACTGCCTCCGTCGTAGCAGGGCCCAGACCAGGACAGgaccaaacagagaggagagacagagaggagagacaccacAGGGCTGGAAGCTGGGGACTGGGGCCGCTCTATGACAGAAAGAATGAGGGTGTGATGCGCCGAGCTCTTGCGGTCTCGTACTACAACGGTGTAGCGACCTGAATGCTCAGGTCCTGGCTCTGCTATCACCAACGTAGTGCTCTGATCACTGCTCTCTACCCACAACTCAGACCCATCTACAACCGGTTCTTTATTTCGTATCCAGCAGGACACCACAGGGGGACTTCCGCAGAACACACACGTCAGACGGGCTGTCTCTCCTAGCCGTGCCTCAATGTAGGATGGGGGATCCTTAAACTGCAACGAGACTGTCCCCGAGCTGGCTCTCTTCTTTGGCGTGACTTCTGTGGAGACTTTTCGGGGTCCTCCTGTGCTCGGGGTGTTAGAGCTTATTGTGGAGCTGGATTGTCTGAAGACACTGTCATTGTTGGAGGACAGTAGTAACTTTGAGCCTCTGTTCTCCATAATGTTGAGGGGAGTGGAAGTGTGTGAAGTTGCGTTCAGGACTCCCCAGATAGGCTTAAAGTctctcacacacacagctgcgcTGCTGGAGGTCTTTCCCGCTCGGTTCTCTGCCACACAGGTGTAGGCGCCCGCGTCCTCAGGTAGGCATTCCCTCACCACCAACCTAGCCTCACTGCCATCGAAGAGGGGCTTCCCAAAAAACACTGCCTCACCATTGTGCAGCCAGGACACACTGATTGGCTGACTTCCTGTGATAACCCCTCGGAGTGTGACGTCACTTCCTTCATCTGCCGAGCAGTCCTCCAAAGACTCTGTGAACAGGGGTGGATCCAGACTTCTGAGGGGGGTTGGTGTGTGGCAGCTGTCCCcTGTACTAGAGGCTGTGTCTATCCCAGTCCTAGTGGCAGTAGCAGAAGTGATACTGGCTGCCAGGATGTTTTTTCCCTGCCCAGGGGAAGTGTTGGTGGGTCCGATGTACATCCTGAGGGTTGATACATAGCGCTTCTTGGAGCTGCTGTCACTGCTCATGTCCGGCTCCACAATGTCTCTGCATTCAACGCACAAACTTAAACAGTCATTTCCCGAGCCGCTTATCaaacatcctctccctctctcggtcaCTGttgctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257059 lncRNA upstream 94994 70665800 ~ 70666048 (+) True G1105573
TU1257049 lncRNA upstream 122565 70638042 ~ 70638477 (+) True G1105565
TU1256959 lncRNA upstream 164867 70595419 ~ 70596175 (+) True G1105476
TU1256949 lncRNA upstream 172045 70587166 ~ 70588997 (+) True G1105466
TU1257024 lncRNA upstream 175382 70585417 ~ 70585660 (+) True G1105540
TU1257151 lncRNA downstream 44244 70819163 ~ 70827806 (+) True LOC110538205
TU1257176 lncRNA downstream 73569 70848488 ~ 70848715 (+) True G1105661
TU1257179 lncRNA downstream 76451 70851370 ~ 70852131 (+) True G1105664
TU1257177 lncRNA downstream 85023 70859942 ~ 70860164 (+) True G1105662
TU1257184 lncRNA downstream 87695 70862614 ~ 70862829 (+) True G1105669
XM_021624859.2 mRNA upstream 2876 70756654 ~ 70758166 (+) True LOC110538203
XM_021624856.2 mRNA upstream 6497 70752514 ~ 70754545 (+) True LOC110538201
XM_021624854.2 mRNA upstream 10805 70745535 ~ 70750237 (+) True si:ch73-141c7.1
XM_021624853.2 mRNA upstream 24689 70734239 ~ 70736353 (+) True LOC110538199
XM_021624850.2 mRNA upstream 96229 70640964 ~ 70664813 (+) False LOC110538197
XM_021624862.2 mRNA downstream 32248 70807167 ~ 70819174 (+) False LOC110538205
XM_036938261.1 mRNA downstream 32248 70807167 ~ 70819174 (+) False LOC110538205
XM_036938262.1 mRNA downstream 32248 70807167 ~ 70819174 (+) False LOC110538205
trnaa-ugc-56 mRNA downstream 133570 70908489 ~ 70908564 (+) True trnaa-ugc-56
XM_021624865.2 mRNA downstream 209812 70984731 ~ 70986552 (+) False LOC110538209
TU1256950 other upstream 127071 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 389831 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 433916 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 566370 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 712055 70022708 ~ 70048987 (+) True G1105194
TU1257166 other downstream 127986 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 127986 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 127986 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1166632 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 1242674 72017593 ~ 72018290 (+) True LOC110538241

Expression Profile