RNA id: TU1257168


Basic Information

Item Value
RNA id TU1257168
length 1910
RNA type TUCP
GC content 0.47
exon number 3
gene id G1105655
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70902905 ~ 70906429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccatcatcttctctctttccctctcagtctctccatcatcttctctctctccctctcagtctctccatcctcttctctctctctatctctctccctctctctctccatctctctctccatctctctctctccttctctttccatctctctctccctctctctatctccatctctctccctctctctctttccatctctctctccatctctctctcgcttcctccctttccttctctctctctctccatctctctctctcactctccttccatctctctctccctatctccatctctctctccctatctctatctccatctctctccctctctctctttccatctctctctccatctctctctcgcttcctctctttccttctctctctctctccatctctctctctcactctccttccatctctctctccctatctccatctctctctccctatctccatctctctctctctatctccatctctctctccctccatctctctccctccatctctctccctctctctccctccatctctctctccctccatctctctccctccatctctctccctctctctccctccatctctctctccccccatctctctccctccatctctctctctctctctccctccatctctctctctctctctctctctctccttgctctgcTTGATATGTTTTACTTCACCACAGCAGAGTGCTCGAGGACGAAGCTGAAGTAATGGACACTGTTTTTTTATCAAATAGTTTACCTCAGAATCGGAATATGTGGCTTCATTGATGGTGGAGGATATCTACGTAACTAGAACATCTAATATACATTTGAGTCTATTTTCAACCCACTTTGGCCCTGTATAGACAAATAGGATAAGGGTATAGAGACGGGACAAGGGGCAAGGATAGAGACTCTAGATGTGTTGGATGGGACAAGGGAAAATGTCATGTTGTATCTGTATAACATGCCTTGCATGAATAACTTTCAGCCACAAACCAGGTCTGTGTTCCCACAGCTGACATCACCCATAAACAAACACCATGTGATAGCAGGCTGTCAAATGCAAGAAATCATGTATCGTTAGAAACCATAATGACACCTTTCATTTCCATTTCTCAGCTAAAGGCTTCTGAATCACAATCAACATCTCACAAAACCATTCTCTCAAAATCAAGTTTTTTTTATCTCACAAGGGACAAACATATTTTTAATATCCTCTTTTGTGTAAATATACAATGTAGTAGTATCTTTTACTAAATTAAAATACTGACATTCTAAGGAAAAGCACACAACGACAAGATAGGACAATTTCAGTCAACAGCGTCCATATAGCCAACTGTTATGGAGAGAAGATGATGAGGCCGGATCCACTTGGCGTTAGTTGGTTTATTTTCCAGTTTGAGGAAGAGGAAAGCGAGGAGCAACTGACAGGTTAGAATTCTGATGAGGAGGGCACCTCTCTCTACCAAGCTTCACTCCTCACTACTCCCTCCCCTATCATcatgttctccctccctccctcacagcaCGGCAGACAGGCAGGCCGAGCTGAGCTGGAGAACCTTGATTTGGGGCTGATGTGTTTTATAAGCAGAGGTGTGACGATGGAGACAACCAGGAAACTAGAAAGCATTCTGGCTTTTAACCCCTTCCTTCCCTCATTTACAactctttctctcaatctcttactttgtctttctctctctggacgtGGCACCTGGGTGGGTTCAGTCGGCGTAGAGGATGAACCCAGAGAAGGTGctgtatttgttgttgttgccgcCGTGAGCCTTGCCCCCGTCCAGCTTGATATAGACCTCGTCGCCTGCGTCTAGGTGGAGGATGACGCTATTGGAGGCGTAGTCATAGTTCTGGTCAGCGTCCTGGGCGATGGCACTGGCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257201 lncRNA upstream 3082 70899370 ~ 70899823 (+) True G1105686
TU1257200 lncRNA upstream 3922 70898719 ~ 70898983 (+) True G1105685
TU1257184 lncRNA upstream 40076 70862614 ~ 70862829 (+) True G1105669
TU1257177 lncRNA upstream 42741 70859942 ~ 70860164 (+) True G1105662
TU1257179 lncRNA upstream 50774 70851370 ~ 70852131 (+) True G1105664
TU1257226 lncRNA downstream 36748 70943177 ~ 70943443 (+) True G1105710
TU1257231 lncRNA downstream 45070 70951499 ~ 70951726 (+) True G1105715
TU1257252 lncRNA downstream 71944 70978373 ~ 70978580 (+) True G1105735
TU1257271 lncRNA downstream 93142 70999571 ~ 70999772 (+) True G1105751
TU1257264 lncRNA downstream 103627 71010056 ~ 71016479 (+) True G1105744
XM_021624862.2 mRNA upstream 83731 70807167 ~ 70819174 (+) False LOC110538205
XM_036938261.1 mRNA upstream 83731 70807167 ~ 70819174 (+) False LOC110538205
XM_036938262.1 mRNA upstream 83731 70807167 ~ 70819174 (+) False LOC110538205
XM_021624859.2 mRNA upstream 144739 70756654 ~ 70758166 (+) True LOC110538203
XM_021624856.2 mRNA upstream 148360 70752514 ~ 70754545 (+) True LOC110538201
trnaa-ugc-56 mRNA downstream 2060 70908489 ~ 70908564 (+) True trnaa-ugc-56
XM_021624865.2 mRNA downstream 78302 70984731 ~ 70986552 (+) False LOC110538209
XM_021624866.2 mRNA downstream 78358 70984787 ~ 70986552 (+) True LOC110538209
XM_036938264.1 mRNA downstream 80697 70987126 ~ 70991795 (+) True LOC110538210
XM_036938265.1 mRNA downstream 114833 71021262 ~ 71039796 (+) False LOC110538212
TU1256950 other upstream 268934 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 531694 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 575779 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 708233 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 853918 70022708 ~ 70048987 (+) True G1105194
TU1257763 other downstream 1035122 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 1111164 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 2398996 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 2478379 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 2927214 73833643 ~ 73834606 (+) True G1109778

Expression Profile