RNA id: TCONS_00041043


Basic Information

Item Value
RNA id TCONS_00041043
length 646
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_020833
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6661712 ~ 6662906 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCCATTTGTATTGTATCCGAGTTGACATGAGCTGTTATGTGGCTTTCGCAGAGTAAATACAGCGTTACGTTAGTGTTGTATTAAGGGCTGTAATAGTAAATCACACGATCGAAAAGGTAATAAATGATCACAACGACAGATATTTTAAATTTCCCGCTCGGAAGAAAGTATATTGACAGACTGTAGTGGCGGTAACAACGGATGCATCGGGTGACCTGGCCAGCTGCATTGAGACGCAAAATATATCTTCATTTCTCCGTTTATGCTCTCAACATTATCACAAAGCCAAGCTGCATATGACTCAGACTGAGCACCATCTCTACATCTGGGCCTCACAAAAACTACACAGACAGACACTGCACACTCTGCAAGACAAACTGGGAAAGAAAACCAACACTGCAGTCAGCTGAAGATGTGGACGACCAACATGCTGAGAAGGAGACACTTGGGGTTGAAGATGGTGAGAGAAACTGATGAGAACACAACACTAAGGAGGTAGCTGAGACAAACTGAATGTAAACTGTGTATGAACACGTGTAGAAATAAACCACCTGTTGGAGGAGAACTGACAGCTGCTGTGTGAATTTGAAGAATACAGGATTGCTGATGGATTTTGTAACAAGAATGATGCTAAAGtaacaaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148874

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041938 lncRNA downstream 95751 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00041039 lncRNA downstream 132335 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00042322 lncRNA downstream 261995 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00042321 lncRNA downstream 414973 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042320 lncRNA downstream 493760 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042323 lncRNA upstream 33611 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00042324 lncRNA upstream 64634 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00041046 lncRNA upstream 146460 6809366 ~ 6813803 (-) False XLOC_020838
TCONS_00041047 lncRNA upstream 146622 6809528 ~ 6818528 (-) True XLOC_020838
TCONS_00042325 lncRNA upstream 172853 6835759 ~ 6854584 (-) False XLOC_020839
TCONS_00041042 mRNA downstream 10330 6632702 ~ 6651382 (-) True XLOC_020832
TCONS_00041040 mRNA downstream 99094 6546697 ~ 6562618 (-) True XLOC_020829
TCONS_00041036 mRNA downstream 162635 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041037 mRNA downstream 162657 6487559 ~ 6499055 (-) True XLOC_020826
TCONS_00041034 mRNA downstream 196652 6456003 ~ 6465060 (-) True XLOC_020824
TCONS_00041044 mRNA upstream 102074 6764980 ~ 6777976 (-) True XLOC_020836
TCONS_00041045 mRNA upstream 125855 6788761 ~ 6801876 (-) True XLOC_020837
TCONS_00041048 mRNA upstream 166560 6829466 ~ 6849585 (-) False XLOC_020839
TCONS_00041049 mRNA upstream 218539 6881445 ~ 6884981 (-) True XLOC_020840
TCONS_00041050 mRNA upstream 259100 6922006 ~ 6923086 (-) False XLOC_020841
TCONS_00041041 other downstream 60125 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041038 other downstream 141686 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041035 other downstream 185454 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041030 other downstream 256802 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041024 other downstream 344751 6313773 ~ 6316961 (-) True XLOC_020818
TCONS_00041072 other upstream 951766 7614672 ~ 7617991 (-) False XLOC_020858
TCONS_00041073 other upstream 952833 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041090 other upstream 1683169 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041096 other upstream 1844641 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041137 other upstream 3051308 9714214 ~ 9714331 (-) True XLOC_020901

Expression Profile

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