RNA id: TCONS_00041045


Basic Information

Item Value
RNA id TCONS_00041045
length 432
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_020837
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6788761 ~ 6801876 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCACTACTTCAAAATGCAAGATCAGGATGTTGACTGACATACTCTCTACGTTTACCCACTTTTGATGACTTCTACTGCTGAAAAACCTGGAAATTGTTCATTTCCGAAGTTCAAGGCTTTTTCGAGGTTCAAgGTACTGGAAATCCACTCAGGGGGCTGGCTGGCTGCACAATATCATCTAGCTTTTCTGGTCAAAATGAACATCAAAGTGCTAATCATTCTATCAGTTGCTGGTTCAGATAGAGCTTCTGTGTCCGTGATAGAGGGGGATTCAGTTACCCTACCCACTGATGTTATAATGATCCAGGAGCAAGATTTTAAATGGTATTTCAATGACACTCGCATAGCTCAAATGAATGGGGATCGCAGTTACTCCTGTACAGATGTTCACTGTAATGAAGGTACTGAGAGATTCAGAGGCAGACTGACG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-5 No description available

Ensembl:

ensembl_id ENSDART00000135726

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042324 lncRNA downstream 35735 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00042323 lncRNA downstream 77245 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00041938 lncRNA downstream 222800 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00041039 lncRNA downstream 259384 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00042322 lncRNA downstream 389044 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00041046 lncRNA upstream 7490 6809366 ~ 6813803 (-) False XLOC_020838
TCONS_00041047 lncRNA upstream 7652 6809528 ~ 6818528 (-) True XLOC_020838
TCONS_00042325 lncRNA upstream 33883 6835759 ~ 6854584 (-) False XLOC_020839
TCONS_00042326 lncRNA upstream 47646 6849522 ~ 6853927 (-) True XLOC_020839
TCONS_00041059 lncRNA upstream 194171 6996047 ~ 7006974 (-) True XLOC_020846
TCONS_00041044 mRNA downstream 10785 6764980 ~ 6777976 (-) True XLOC_020836
TCONS_00041042 mRNA downstream 137379 6632702 ~ 6651382 (-) True XLOC_020832
TCONS_00041040 mRNA downstream 226143 6546697 ~ 6562618 (-) True XLOC_020829
TCONS_00041036 mRNA downstream 289684 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041037 mRNA downstream 289706 6487559 ~ 6499055 (-) True XLOC_020826
TCONS_00041048 mRNA upstream 27590 6829466 ~ 6849585 (-) False XLOC_020839
TCONS_00041049 mRNA upstream 79569 6881445 ~ 6884981 (-) True XLOC_020840
TCONS_00041050 mRNA upstream 120130 6922006 ~ 6923086 (-) False XLOC_020841
TCONS_00041051 mRNA upstream 120319 6922195 ~ 6923347 (-) True XLOC_020841
TCONS_00041052 mRNA upstream 130423 6932299 ~ 6941098 (-) True XLOC_020842
TCONS_00041043 other downstream 125855 6661712 ~ 6662906 (-) True XLOC_020833
TCONS_00041041 other downstream 187174 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041038 other downstream 268735 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041035 other downstream 312503 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041030 other downstream 383851 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041072 other upstream 812796 7614672 ~ 7617991 (-) False XLOC_020858
TCONS_00041073 other upstream 813863 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041090 other upstream 1544199 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041096 other upstream 1705671 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041137 other upstream 2912338 9714214 ~ 9714331 (-) True XLOC_020901