RNA id: TCONS_00041046


Basic Information

Item Value
RNA id TCONS_00041046
length 976
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_020838
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6809366 ~ 6818528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGATGAATATCTCTGTACTGTTGGTGCTTCTGCCAGTTGGGATTGTTGGAGCTGATTCATATGGAGTTTCAGTGATGGAGGGAGATCCAGTCACTCTACCCACCAATGTTACAAAAACCCAACAGGAAgatgttaaatattatttcaacAACACTCTTATCGCTCAACTCACTGGAGATCTCAGTTTTGCTTGCACTGATGTGCAGTGTAATAAAGTGAATGAGAGATTCAGAGGCCGACTGAAGCTAGACTATGAAACTGGAACTCTGACCATCATGAACACCACAAGCACAGACTCTGGAGATTATCATCAAGAGATCATCGGCAGCGGCACCATCCATGAAAATATCTTCAATGTTTCTGTCCATAGTGAGTCACTTTTTAATCACATCCCAGTGTATTGCTGATATCTGATTTCTTTTTGCCTGCTTTCTCATTATGCAGATCTTTTATGAACTTTTCCTgtgtgtagattttttttttctctagaatGATTTCAAATTGATTAGCCTATTTGGTGTCTTTAACCTCATGATTGATGAAAACAAACAACATTAAAGTGCAAGCTGGGTACCAAATATACTAAATAAAGTTACATAGACAATGTAACTTTTTAGACAGTTGTTGTCACAAGACCATGCATGGAGCTTTCTTTCCAAAATGACCGTAAATCATCTGTTGGTTTGTGTTTCAGATGTTTCTGCTACTAAAAGAGATGTAGTCAAGAAAATGTCAGAGAAGGAGGGAGAATCTGTCACTTCAGATTCtggtaataaattaataatgcaaTCAATAATTTTATTACTTTGATGGCTTGTTGTTATCTTGTTATTGATACATTCTATCTTTATCAGTTTCAGTTCTGTCTTTAGGTGCTGTAGCCGGAATGTCTTGTTGTTATTGCTGCTGTTGCTGGTGGGATTTACTATCACAGGTGCCAAACAACAGTTTTAACATGATGAAAATATAAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042324 lncRNA downstream 56340 6727540 ~ 6753026 (-) True XLOC_020835
TCONS_00042323 lncRNA downstream 97850 6696517 ~ 6711516 (-) True XLOC_020834
TCONS_00041938 lncRNA downstream 243405 6563646 ~ 6565961 (-) True XLOC_020830
TCONS_00041039 lncRNA downstream 279989 6527414 ~ 6529377 (-) True XLOC_020828
TCONS_00042322 lncRNA downstream 409649 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00042325 lncRNA upstream 21956 6835759 ~ 6854584 (-) False XLOC_020839
TCONS_00042326 lncRNA upstream 35719 6849522 ~ 6853927 (-) True XLOC_020839
TCONS_00041059 lncRNA upstream 182244 6996047 ~ 7006974 (-) True XLOC_020846
TCONS_00041061 lncRNA upstream 196063 7009866 ~ 7010767 (-) True XLOC_020847
TCONS_00041939 lncRNA upstream 609081 7422884 ~ 7423468 (-) True XLOC_020851
TCONS_00041045 mRNA downstream 7490 6788761 ~ 6801876 (-) True XLOC_020837
TCONS_00041044 mRNA downstream 31390 6764980 ~ 6777976 (-) True XLOC_020836
TCONS_00041042 mRNA downstream 157984 6632702 ~ 6651382 (-) True XLOC_020832
TCONS_00041040 mRNA downstream 246748 6546697 ~ 6562618 (-) True XLOC_020829
TCONS_00041036 mRNA downstream 310289 6487048 ~ 6499077 (-) False XLOC_020826
TCONS_00041048 mRNA upstream 15663 6829466 ~ 6849585 (-) False XLOC_020839
TCONS_00041049 mRNA upstream 67642 6881445 ~ 6884981 (-) True XLOC_020840
TCONS_00041050 mRNA upstream 108203 6922006 ~ 6923086 (-) False XLOC_020841
TCONS_00041051 mRNA upstream 108392 6922195 ~ 6923347 (-) True XLOC_020841
TCONS_00041052 mRNA upstream 118496 6932299 ~ 6941098 (-) True XLOC_020842
TCONS_00041043 other downstream 146460 6661712 ~ 6662906 (-) True XLOC_020833
TCONS_00041041 other downstream 207779 6587550 ~ 6601587 (-) True XLOC_020831
TCONS_00041038 other downstream 289340 6515397 ~ 6520026 (-) True XLOC_020827
TCONS_00041035 other downstream 333108 6476142 ~ 6476258 (-) True XLOC_020825
TCONS_00041030 other downstream 404456 6401579 ~ 6404910 (-) True XLOC_020820
TCONS_00041072 other upstream 800869 7614672 ~ 7617991 (-) False XLOC_020858
TCONS_00041073 other upstream 801936 7615739 ~ 7617991 (-) True XLOC_020858
TCONS_00041090 other upstream 1532272 8346075 ~ 8346200 (-) True XLOC_020873
TCONS_00041096 other upstream 1693744 8507547 ~ 8509177 (-) True XLOC_020880
TCONS_00041137 other upstream 2900411 9714214 ~ 9714331 (-) True XLOC_020901